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[171855_x_at]

Description C57644_rc /REP_DB=TREMBL Accession /GB=C57644 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk191c12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 39      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 90      6grp_total > 29      4grp_total > 59      6grp_high1_sub > Cu      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 141.5
(0)
P 		147.3
(0.4)
P 		192.9
(3)
P 		89.6
(-3)
P 		103
B 111.7
(-1.3)
P 		164.3
(1.6)
P 		190
(3)
P 		81.4
(-3)
P 		109
C 165.7
(1.1)
P 		195.1
(2.5)
P 		205.6
(3)
P 		80.1
(-3)
P 		126
avr 139.6
(-0) 		168.9
(1.5) 		196.2
(3) 		83.7
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 134.3
(-0.4)
P 		174.4
(3)
P 		107.4
(-2.6)
P 		102.6
(-3)
P 		171.1
(2.7)
P 		126.1
(-1)
P 		72
B 199.8
(3)
P 		152.9
(1.1)
P 		50.7
(-3)
P 		113
(-0.5)
P 		186.2
(2.5)
P 		159.8
(1.4)
P 		149
C 260.4
(3)
P 		112.2
(-2)
P 		94.2
(-2.6)
P 		80.8
(-3)
P 		210.3
(1.3)
P 		156.9
(-0.5)
P 		180
avr 198.2
(3) 		146.5
(0.3) 		84.1
(-3) 		98.8
(-2.2) 		189.2
(2.5) 		147.6
(0.3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 51.5
(3)
P 		32
(-0)
P 		50.4
(2.8)
P 		13.1
(-3)
P 		38
B 35.6
(1.1)
P 		40.6
(2.2)
P 		44
(3)
P 		17.3
(-3)
P 		27
C 54.8
(1.3)
P 		56.1
(1.4)
P 		71.7
(3)
P 		13.5
(-3)
P 		58
avr 47.3
(1.8) 		42.9
(1.2) 		55.4
(3) 		14.6
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 24.8
(-2.8)
P 		62
(3)
P 		23.4
(-3)
P 		26
(-2.6)
P 		51.6
(1.4)
P 		30.7
(-1.9)
P 		39
B 69.5
(2.4)
P 		50.9
(0.7)
P 		12.3
(-3)
P 		29.9
(-1.3)
P 		75.7
(3)
P 		59.6
(1.5)
P 		63
C 96.5
(3)
P 		34.2
(-1.7)
P 		24
(-2.4)
P 		16.2
(-3)
P 		68
(0.9)
P 		52.5
(-0.3)
P 		80
avr 63.6
(2.8) 		49
(0.9) 		19.9
(-3) 		24
(-2.5) 		65.1
(3) 		47.6
(0.7) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171855_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27663
Sequence Type Exemplar sequence
Representative Public ID C57644 NCBI
Target Description C57644_rc /REP_DB=TREMBL Accession /GB=C57644 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk191c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075105
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y59A8A.3.1 ENSEMBL cdna:known chromosome:CEL140:V:17848320:17858562:-1 gene:Y59A8A.3 None
Y59A8A.3.2 ENSEMBL cdna:known chromosome:CEL140:V:17848320:17858565:-1 gene:Y59A8A.3 None
Y59A8A.3.3 ENSEMBL cdna:known chromosome:CEL140:V:17848337:17858567:-1 gene:Y59A8A.3 None
NM_075105 NCBI Caenorhabditis elegans Y59A8A.3 (Y59A8A.3) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17848380-17848641(-) 86.09 86.09
Public Domain and Genome References
Gene Title
Ensembl Y59A8A.3
Entrez Gene 180167 Entrez gene
SwissProt Q9GRZ9 EMBL-EBI
WormBase CE26201 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC14400 Hypothetical protein Y59A8A.3 [Caenorhabditis elegans] ref|NP_507506.1| Y59A8A.3 [Caenorhabditis elegans] 0.0
blast CAE61705 Hypothetical protein CBG05654 [Caenorhabditis briggsae] 6.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507506.1 1 12-31
Y59A8A.3.1 1 12-31
Y59A8A.3.2 1 12-31
Y59A8A.3.3 1 12-31
Sequence
Target Sequence 
>C. ELEGANS:171855_X_AT
tggaattttaatagtgagaggatagnnnnntgatcatnntntttccgttnttccgccgcc
cttcgaacaccaaaanatattgtgatccgccgnnnnngcacatcctgtcgaaatttcccc
gttggagannnnnnngtantaattgtgttcctttnnnnnacaaatatntatttattattg
ccacttttattgttttnnnnnnatgttttaccgcttaattttcgctgtaaatggacttga
aattccaattttatgacgtcatgca

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAATTTTAATAGTGAGAGGATAG 567 545 20 Antisense
TATTTATTATTGCCACTTTTATTGT 306 661 188 Antisense
TTATTATTGCCACTTTTATTGTTTT 568 679 191 Antisense
ATGTTTTACCGCTTAATTTTCGCTG 638 45 222 Antisense
TGTTTTACCGCTTAATTTTCGCTGT 484 561 223 Antisense
TTACCGCTTAATTTTCGCTGTAAAT 226 683 227 Antisense
ACCGCTTAATTTTCGCTGTAAATGG 340 87 229 Antisense
TAATTTTCGCTGTAAATGGACTTGA 465 627 235 Antisense
TTCGCTGTAAATGGACTTGAAATTC 337 697 240 Antisense
GAAATTCCAATTTTATGACGTCATG 643 363 258 Antisense
AATTCCAATTTTATGACGTCATGCA 231 179 260 Antisense
Sequence Source Affymetrix Proprietary Database