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[171853_x_at]

Description CEC0073_rc /REP_DB=TREMBL Accession /GB=C11007 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk162b3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 27      4grp_high_8_8 > 56      6grp_highest_nonorm > 10      6grp_total > 36      4grp_total > 63      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 452
1 2 3 4 range
A 1726.4
(-1.7)
P 		1832.3
(3)
P 		1751.4
(-0.6)
P 		1697.4
(-3)
P 		135
B 1733.8
(-0.4)
P 		1539
(-3)
P 		1991
(3)
P 		1735.7
(-0.4)
P 		452
C 1842.1
(3)
P 		1706.6
(-3)
P 		1779.6
(0.2)
P 		1722.8
(-2.3)
P 		136
avr 1767.4
(0) 		1692.6
(-3) 		1840.7
(3) 		1718.6
(-1.9) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 996
1 2 3 4 5 6 range
A 1678.2
(3)
P 		1409.1
(1.4)
P 		1081.5
(-0.6)
P 		682.6
(-3)
P 		1159.4
(-0.1)
P 		1226.9
(0.3)
P 		996
B 1618.5
(3)
P 		1480.9
(1.9)
P 		1606.2
(2.9)
P 		1147.1
(-0.7)
P 		850.7
(-3)
P 		1443.8
(1.6)
P 		768
C 1439.7
(1.7)
P 		1612.3
(3)
P 		1092.1
(-0.9)
P 		817.2
(-3)
P 		935
(-2.1)
P 		1307
(0.7)
P 		795
avr 1578.8
(3) 		1500.8
(2.3) 		1259.9
(0.3) 		882.3
(-3) 		981.7
(-2.1) 		1325.9
(0.8) 		697
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 380
1 2 3 4 range
A 628.6
(3)
P 		397.7
(-0.6)
P 		457.9
(0.3)
P 		248.5
(-3)
P 		380
B 552.9
(3)
P 		380.1
(-2.7)
P 		461.4
(0)
P 		369.9
(-3)
P 		183
C 609.8
(2.8)
P 		490.7
(0.6)
P 		620.3
(3)
P 		290.5
(-3)
P 		330
avr 597.1
(3) 		422.8
(-0.6) 		513.2
(1.3) 		303
(-3) 		294

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 399
1 2 3 4 5 6 range
A 309.4
(-0.5)
P 		501.1
(3)
P 		235.5
(-1.9)
P 		173.1
(-3)
P 		349.8
(0.2)
P 		298.7
(-0.7)
P 		328
B 563.2
(3)
P 		492.9
(1.4)
P 		390
(-1)
P 		303.8
(-3)
P 		345.6
(-2)
P 		538.4
(2.4)
P 		259
C 533.6
(3)
P 		492
(2.3)
P 		278
(-1.2)
P 		164.3
(-3)
P 		302.6
(-0.8)
P 		437.5
(1.4)
P 		369
avr 468.7
(2.4) 		495.3
(3) 		301.2
(-1.1) 		213.7
(-3) 		332.7
(-0.5) 		424.9
(1.5) 		282
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171853_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27859
Sequence Type Exemplar sequence
Representative Public ID CEC0073 NCBI
Target Description CEC0073_rc /REP_DB=TREMBL Accession /GB=C11007 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk162b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029443(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029443 NCBI Caenorhabditis elegans F29G6.3c (F29G6.3) mRNA, complete cds. 9/11 None
F29G6.3c.1 ENSEMBL cdna:known chromosome:CEL140:X:11511484:11518938:-1 gene:F29G6.3 9/11 A 
F29G6.3c.2 ENSEMBL cdna:known chromosome:CEL140:X:11511542:11518938:-1 gene:F29G6.3 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077521 6/11 Cross Hyb Matching Probes A 
SNAP00000010620 6/11 Cross Hyb Matching Probes None
GENEFINDER00000010622 6/11 Cross Hyb Matching Probes None
F29G6.3a 6/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181340 3 1 NM_001029443 171853_x_at (9), 173626_s_at (11)
NM_077521 173626_s_at (11)
NM_077522 171766_x_at (11), 172455_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11511541-11511938(-) 93.2 93.2
Public Domain and Genome References
Ensembl F29G6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH10796 Hypothetical protein F29G6.3c [Caenorhabditis elegans] ref|NP_001024614.1| F29G6.3c [Caenorhabditis elegans] 0.0
blast CAB01754 Hypothetical protein F29G6.3b [Caenorhabditis elegans] ref|NP_509923.1| F29G6.3b [Caenorhabditis elegans] 0.0
blast CAB01755 Hypothetical protein F29G6.3a [Caenorhabditis elegans] ref|NP_509922.2| F29G6.3a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:171853_X_AT
tattgctgttccaattccgagatcccgcaatgctactctcacacaagaaaacgtccacga
gcacgaccaatatgacgatttgattcatgttgctgatatgcgcaagcnnnnngaaaacta
tggacctgctcatcttccggaatacgcgtcgaacccatctgcttacattcactaattcta
tttgtattatcttaactgcaatccaacnnccnaaatgtcntattgctaaacctgtgatag
ctagtacatt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGCTGTTCCAATTCCGAGATCC 228 665 26 Antisense
CGCAATGCTACTCTCACACAAGAAA 333 253 51 Antisense
AAGAAAACGTCCACGAGCACGACCA 240 75 70 Antisense
ACGAGCACGACCAATATGACGATTT 426 93 82 Antisense
GACGATTTGATTCATGTTGCTGATA 224 379 99 Antisense
AAAACTATGGACCTGCTCATCTTCC 261 131 139 Antisense
TCATCTTCCGGAATACGCGTCGAAC 76 621 155 Antisense
ACCCATCTGCTTACATTCACTAATT 48 91 178 Antisense
GCTTACATTCACTAATTCTATTTGT 371 305 186 Antisense
TGTATTATCTTAACTGCAATCCAAC 630 559 208 Antisense
CTAAACCTGTGATAGCTAGTACATT 239 225 251 Antisense
Sequence Source Affymetrix Proprietary Database