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[171851_x_at]

Description CEC910_rc /REP_DB=TREMBL Accession /GB=C07910 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk168g10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 0      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 76      6grp_total > 04      4grp_total > 56      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 893
1 2 3 4 range
A 1016.6
(-3)
P 		1432.6
(0.5)
P 		1737.6
(3)
P 		1041.2
(-2.8)
P 		721
B 1389
(1.7)
P 		1226.3
(-2.4)
P 		1442
(3)
P 		1201.5
(-3)
P 		241
C 1099.5
(-1.3)
P 		1522.6
(1.6)
P 		1726
(3)
P 		844.9
(-3)
P 		881
avr 1168.4
(-1.6) 		1393.8
(0.6) 		1635.2
(3) 		1029.2
(-3) 		606

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 726
1 2 3 4 5 6 range
A 1411.4
(3)
P 		1194.4
(0.9)
P 		805.6
(-3)
P 		1071.1
(-0.4)
P 		1202.1
(0.9)
P 		994.6
(-1.1)
P 		606
B 1487.3
(3)
P 		1106.5
(-0.3)
P 		860.6
(-2.4)
P 		1312.2
(1.5)
P 		887.9
(-2.2)
P 		792.6
(-3)
P 		695
C 996.3
(0.8)
P 		1128.5
(3)
P 		1123.7
(2.9)
P 		1105.5
(2.6)
P 		793.5
(-2.5)
P 		761.5
(-3)
P 		367
avr 1298.3
(3) 		1143.1
(0.9) 		930
(-1.9) 		1162.9
(1.2) 		961.2
(-1.5) 		849.6
(-3) 		449
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 459
1 2 3 4 range
A 370.1
(1.3)
P 		311
(0.2)
P 		454.2
(3)
P 		152.4
(-3)
P 		302
B 442.9
(3)
P 		302.9
(-1.5)
P 		334.2
(-0.5)
P 		256
(-3)
P 		187
C 364
(-0.1)
P 		437.8
(0.9)
P 		601.6
(3)
P 		142.5
(-3)
P 		459
avr 392.3
(1.5) 		350.6
(0.6) 		463.3
(3) 		183.6
(-3) 		280

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 260.2
(-1)
P 		424.8
(3)
P 		175.4
(-3)
P 		271.7
(-0.7)
P 		362.7
(1.5)
P 		242.2
(-1.4)
P 		249
B 517.5
(3)
P 		368.3
(0.1)
P 		209
(-3)
P 		347.6
(-0.3)
P 		360.8
(-0)
P 		295.6
(-1.3)
P 		309
C 369.3
(3)
P 		344.3
(2)
P 		286
(-0.4)
P 		222.3
(-3)
P 		256.8
(-1.6)
P 		254.9
(-1.7)
P 		147
avr 382.3
(3) 		379.1
(2.9) 		223.5
(-3) 		280.5
(-0.8) 		326.8
(0.9) 		264.2
(-1.5) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171851_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27751
Sequence Type Exemplar sequence
Representative Public ID CEC910 NCBI
Target Description CEC910_rc /REP_DB=TREMBL Accession /GB=C07910 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk168g10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068953(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068953 NCBI Caenorhabditis elegans Y42H9AR.1 (Y42H9AR.1) mRNA, complete cds. 10/11 A 
Y42H9AR.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:8113374:8115639:1 gene:Y42H9AR.1 10/11 None
Y42H9AR.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:8113474:8115640:1 gene:Y42H9AR.1 10/11 A 
Y42H9AR.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:8113476:8115649:1 gene:Y42H9AR.1 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030218 3/11 Cross Hyb Matching Probes None
GENEFINDER00000030221 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8115293-8115594(+) 89.67 89.67
Public Domain and Genome References
Gene Title
Ensembl Y42H9AR.1
Entrez Gene 177604 Entrez gene
SwissProt Q9N3Y1 EMBL-EBI
WormBase CE25278 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584256_AT similar to golgi reassembly stacking protein 2 cfa
CANINE:1584154_AT similar to golgi reassembly stacking protein 2 cfa
CANINE_2:CFA.11646.1.A1_AT similar to golgi reassembly stacking protein 2 cfa
CANINE_2:CFA.11646.1.A1_S_AT similar to golgi reassembly stacking protein 2 cfa
CANINE_2:CFA.11646.1.A2_AT similar to golgi reassembly stacking protein 2 cfa
CANINE_2:CFAAFFX.19575.1.S1_AT similar to golgi reassembly stacking protein 2 cfa
DROSOPHILA_2:1628710_AT dm
DROSGENOME1:149079_AT dm
CHICKEN:GGA.7434.1.S1_AT golgi reassembly stacking protein 2, 55kDa gga
HG-U133_PLUS_2:207812_S_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U133A:207812_S_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U133A_2:207812_S_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U133_PLUS_2:208843_S_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U133A_2:208843_S_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U133A:208843_S_AT golgi reassembly stacking protein 2, 55kDa hs
HU35KSUBB:RC_N39148_AT golgi reassembly stacking protein 2, 55kDa hs
U133_X3P:G7661569_3P_A_AT golgi reassembly stacking protein 2, 55kDa hs
U133_X3P:HS.6880.1.S1_3P_A_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U133A_2:208842_S_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U133_PLUS_2:208842_S_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U133A:208842_S_AT golgi reassembly stacking protein 2, 55kDa hs
HG-U95AV2:35805_AT golgi reassembly stacking protein 2, 55kDa hs
U133_X3P:HS2.125703.1.S1_3P_S_AT Golgi reassembly stacking protein 2, 55kDa hs
HG-U133_PLUS_2:1568935_AT Golgi reassembly stacking protein 2, 55kDa hs
HG-U133_PLUS_2:1568936_A_AT Golgi reassembly stacking protein 2, 55kDa hs
HG-U95C:52215_AT Golgi reassembly stacking protein 2, 55kDa hs
HG-U95AV2:35806_AT Golgi reassembly stacking protein 2, 55kDa hs
HG-U95E:78908_AT Golgi reassembly stacking protein 2, 55kDa hs
MOE430A:1460460_A_AT golgi reassembly stacking protein 2 mm
MOUSE430A_2:1460460_A_AT golgi reassembly stacking protein 2 mm
MOUSE430_2:1460460_A_AT golgi reassembly stacking protein 2 mm
MU11KSUBB:W13835_G_AT golgi reassembly stacking protein 2 mm
MG-U74AV2:94876_F_AT golgi reassembly stacking protein 2 mm
MG-U74BV2:164800_AT golgi reassembly stacking protein 2 mm
MG-U74CV2:168522_F_AT golgi reassembly stacking protein 2 mm
MG-U74CV2:168523_AT golgi reassembly stacking protein 2 mm
MOE430A:1424710_A_AT golgi reassembly stacking protein 2 mm
MOUSE430A_2:1424710_A_AT golgi reassembly stacking protein 2 mm
MOUSE430_2:1424710_A_AT golgi reassembly stacking protein 2 mm
MG-U74CV2:168623_I_AT Golgi reassembly stacking protein 2, mRNA (cDNA clone MGC:25922 IMAGE:4234343) mm
MU19KSUBB:TC30770_AT Golgi reassembly stacking protein 2, mRNA (cDNA clone MGC:25922 IMAGE:4234343) mm
MU19KSUBC:TC40636_AT Golgi reassembly stacking protein 2, mRNA (cDNA clone MGC:25922 IMAGE:4234343) mm
MU11KSUBB:W13835_AT Golgi reassembly stacking protein 2, mRNA (cDNA clone MGC:25922 IMAGE:4234343) mm
RG-U34B:RC_AA965073_AT golgi reassembly stacking protein 2 rn
RG-U34C:RC_AI170750_AT golgi reassembly stacking protein 2 rn
RAE230A:1370325_AT golgi reassembly stacking protein 2 rn
RAT230_2:1370325_AT golgi reassembly stacking protein 2 rn
Protein Similarities
Method ID Description E-Value
blast AAF60564 Hypothetical protein Y42H9AR.1 [Caenorhabditis elegans] ref|NP_501354.1| Y42H9AR.1 [Caenorhabditis elegans] 1.0E-146
blast CAE58414 Hypothetical protein CBG01545 [Caenorhabditis briggsae] 1.0E-136
blast AAH74543 MGC69503 protein [Xenopus tropicalis] ref|NP_001004798.1| MGC69503 protein [Xenopus tropicalis] 3.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR007583 EMBL-EBI GRASP55/65 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:171851_X_AT
ccaccacagcaacaacagcagtatggagcatatccacctgctccaccacagtagagctaa
actcaaagtcgtacnccaagggcccttacagtgctggtacttttccccaattagcgttac
aatttcttgtttaatttattgaatggttnttnnnnntgnnnnnnnnnnnnnnnnnnnnnn
caatgtgtcctacctttnccattncnnngannatgctttctccttgtcgtcatcccagat
tggag

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCACAGCAACAACAGCAGTATG 174 273 24 Antisense
GCAGTATGGAGCATATCCACCTGCT 93 313 41 Antisense
TATGGAGCATATCCACCTGCTCCAC 576 655 45 Antisense
ACCTGCTCCACCACAGTAGAGCTAA 139 89 59 Antisense
CTCCACCACAGTAGAGCTAAACTCA 298 235 64 Antisense
AGTAGAGCTAAACTCAAAGTCGTAC 376 53 73 Antisense
GGCCCTTACAGTGCTGGTACTTTTC 92 511 104 Antisense
TTACAGTGCTGGTACTTTTCCCCAA 490 683 109 Antisense
TTCCCCAATTAGCGTTACAATTTCT 657 689 126 Antisense
TAGCGTTACAATTTCTTGTTTAATT 670 651 135 Antisense
TCCTTGTCGTCATCCCAGATTGGAG 385 589 244 Antisense
Sequence Source Affymetrix Proprietary Database