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[171850_x_at]

Description CEC3141_rc /REP_DB=TREMBL Accession /GB=C08314 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk186a8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 24      6grp_total > 42      4grp_total > 61      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3526
1 2 3 4 range
A 3874.3
(3)
P 		1732.4
(-2)
P 		3427.9
(2)
P 		1287.5
(-3)
P 		2587
B 2772.9
(-0.2)
P 		3851.2
(1.9)
P 		4378.7
(3)
P 		1388.7
(-3)
P 		2990
C 3998.1
(3)
P 		2613.7
(0.4)
P 		3578.4
(2.2)
P 		853.2
(-3)
P 		3145
avr 3548.4
(2.4) 		2732.4
(0.6) 		3795
(3) 		1176.5
(-3) 		2619

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3170
1 2 3 4 5 6 range
A 2782.3
(-1.8)
P 		3632.5
(-0)
P 		5084.9
(3)
P 		2914.1
(-1.5)
P 		2540.6
(-2.3)
P 		2214.5
(-3)
P 		2870
B 4304.3
(0.8)
P 		3787
(-0.2)
P 		5384.2
(3)
P 		3457.8
(-0.9)
P 		2781.4
(-2.3)
P 		2414
(-3)
P 		2970
C 3788.2
(3)
P 		3022.1
(-0.2)
P 		3454.2
(1.6)
P 		3703.6
(2.6)
P 		2483.6
(-2.5)
P 		2356
(-3)
P 		1432
avr 3624.9
(0.4) 		3480.5
(-0) 		4641.1
(3) 		3358.5
(-0.3) 		2601.9
(-2.3) 		2328.2
(-3) 		2313
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1267
1 2 3 4 range
A 1410.6
(3)
P 		376.1
(-2.1)
P 		896.1
(0.5)
P 		188.5
(-3)
P 		1222
B 884.3
(1.9)
P 		951.2
(2.5)
P 		1014.7
(3)
P 		295.9
(-3)
P 		719
C 1323.5
(3)
P 		751.5
(0.1)
P 		1247.2
(2.6)
P 		143.9
(-3)
P 		1180
avr 1206.1
(3) 		692.9
(-0.1) 		1052.7
(2.1) 		209.4
(-3) 		997

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 985
1 2 3 4 5 6 range
A 512.9
(-3)
P 		1291.9
(3)
P 		1107.4
(1.6)
P 		739.1
(-1.3)
P 		766.6
(-1)
P 		539.2
(-2.8)
P 		779
B 1497.7
(3)
P 		1260.5
(0.6)
P 		1307.4
(1.1)
P 		915.8
(-2.8)
P 		1130
(-0.7)
P 		900.2
(-3)
P 		598
C 1404.1
(3)
P 		922.1
(-1.4)
P 		879.2
(-1.8)
P 		744.8
(-3)
P 		803.7
(-2.5)
P 		788.7
(-2.6)
P 		659
avr 1138.2
(2.7) 		1158.2
(3) 		1098
(2.1) 		799.9
(-2.2) 		900.1
(-0.7) 		742.7
(-3) 		416
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171850_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27932
Sequence Type Exemplar sequence
Representative Public ID CEC3141 NCBI
Target Description CEC3141_rc /REP_DB=TREMBL Accession /GB=C08314 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk186a8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171184, NM_171185
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K04G7.4a.3 ENSEMBL cdna:known chromosome:CEL140:III:7155607:7158733:-1 gene:K04G7.4 A 
K04G7.4a.2 ENSEMBL cdna:known chromosome:CEL140:III:7155956:7158736:-1 gene:K04G7.4 A 
K04G7.4a.1 ENSEMBL cdna:known chromosome:CEL140:III:7155956:7158733:-1 gene:K04G7.4 A 
K04G7.4b.2 ENSEMBL cdna:known chromosome:CEL140:III:7155978:7158734:-1 gene:K04G7.4 None
K04G7.4b.3 ENSEMBL cdna:known chromosome:CEL140:III:7155978:7158736:-1 gene:K04G7.4 None
K04G7.4b.1 ENSEMBL cdna:known chromosome:CEL140:III:7155978:7158733:-1 gene:K04G7.4 None
K04G7.4a.4 ENSEMBL cdna:known chromosome:CEL140:III:7156164:7158733:-1 gene:K04G7.4 A 
SNAP00000036054 ENSEMBL cdna:SNAP chromosome:CEL140:III:7156273:7158727:-1 None
GENEFINDER00000036062 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7156273:7158727:-1 None
NM_171185 NCBI Caenorhabditis elegans K04G7.4b (K04G7.4) mRNA, complete cds. None
NM_171184 NCBI Caenorhabditis elegans K04G7.4a (K04G7.4) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7156155-7156376(-) 71.62 71.62
Public Domain and Genome References
Ensembl K04G7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA62532 Hypothetical protein K04G7.4a [Caenorhabditis elegans] ref|NP_741215.1| K04G7.4a [Caenorhabditis elegans] 0.0
blast CAE70144 Hypothetical protein CBG16606 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002624 EMBL-EBI Deoxynucleoside kinase 6.0E-73
Pfam IPR002624 EMBL-EBI Deoxynucleoside kinase 6.0E-73
Sequence
Target Sequence 
>C. ELEGANS:171850_X_AT
catcgtccaggaccatgggatggatactacttccgagaggcatactatgatgatttgaca
tctcacgagacatcgctggatttggattcggattcatacgatccggattatgtgcaccat
catcactaaatccatctcttattctcatcgctccagcctgnnnnnnnncagtagatttcg
tagatantagtcgtcgtcgtcttcgattttctgttttcg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCGTCCAGGACCATGGGATGGAT 683 211 16 Antisense
GACCATGGGATGGATACTACTTCCG 508 383 26 Antisense
GATACTACTTCCGAGAGGCATACTA 536 423 38 Antisense
GAGGCATACTATGATGATTTGACAT 526 405 52 Antisense
GACATCTCACGAGACATCGCTGGAT 3 371 72 Antisense
GACATCGCTGGATTTGGATTCGGAT 607 369 84 Antisense
GGATTCGGATTCATACGATCCGGAT 432 509 99 Antisense
GATCCGGATTATGTGCACCATCATC 123 417 115 Antisense
GTGCACCATCATCACTAAATCCATC 17 481 127 Antisense
CTAAATCCATCTCTTATTCTCATCG 413 227 141 Antisense
CGTCGTCTTCGATTTTCTGTTTTCG 573 245 210 Antisense
Sequence Source Affymetrix Proprietary Database