[Home] | [Total List]

[171849_x_at]

Description CEC1733_rc /REP_DB=TREMBL Accession /GB=C11173 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk165c8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 35      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 22      6grp_total > 25      4grp_total > 13      6grp_highest_sub > 02      6grp_cgc > 33      6grp_high1_sub > 02      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2904
1 2 3 4 range
A 2279.1
(0.1)
P 		1316.7
(-1.9)
P 		770
(-3)
P 		3673.5
(3)
P 		2904
B 1829.1
(-0.8)
P 		1241.6
(-2.1)
P 		823.9
(-3)
P 		3581.4
(3)
P 		2758
C 2103.7
(-0.2)
P 		1035
(-2.6)
P 		826.6
(-3)
P 		3605.6
(3)
P 		2779
avr 2070.6
(-0.3) 		1197.8
(-2.2) 		806.8
(-3) 		3620.2
(3) 		2813

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1774
1 2 3 4 5 6 range
A 1066.4
(-1.8)
P 		2280.4
(3)
P 		1669.7
(0.6)
P 		1753.1
(0.9)
P 		760
(-3)
P 		1477.8
(-0.2)
P 		1520
B 1689.3
(3)
P 		1670.9
(2.9)
P 		888.5
(-3)
P 		996.5
(-2.2)
P 		1116.2
(-1.3)
P 		1188.7
(-0.8)
P 		801
C 2534.2
(3)
P 		1638.5
(-0.7)
P 		2093.9
(1.2)
P 		1091.1
(-3)
P 		1640.8
(-0.7)
P 		1268.8
(-2.3)
P 		1443
avr 1763.3
(2.1) 		1863.3
(3) 		1550.7
(0.3) 		1280.2
(-2.1) 		1172.3
(-3) 		1311.8
(-1.8) 		691
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 639
1 2 3 4 range
A 829.8
(3)
P 		285.8
(-2.2)
P 		201.3
(-3)
P 		537.7
(0.2)
P 		629
B 583.3
(1.1)
P 		306.7
(-1.8)
P 		190.9
(-3)
P 		763.2
(3)
P 		572
C 696.4
(3)
P 		297.6
(-2.9)
P 		288.1
(-3)
P 		608
(1.7)
P 		408
avr 703.2
(3) 		296.7
(-2.1) 		226.8
(-3) 		636.3
(2.2) 		476

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 743
1 2 3 4 5 6 range
A 196.6
(-3)
P 		811
(3)
P 		363.6
(-1.4)
P 		444.6
(-0.6)
P 		229.3
(-2.7)
P 		359.8
(-1.4)
P 		614
B 587.8
(3)
P 		556.2
(2.5)
P 		215.8
(-3)
P 		263.9
(-2.2)
P 		453.5
(0.8)
P 		443.2
(0.7)
P 		372
C 939.3
(3)
P 		500
(-0.7)
P 		532.9
(-0.4)
P 		219.4
(-3)
P 		530.9
(-0.4)
P 		424.7
(-1.3)
P 		720
avr 574.6
(2.1) 		622.4
(3) 		370.8
(-1.8) 		309.3
(-3) 		404.6
(-1.2) 		409.2
(-1.1) 		313
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171849_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27823
Sequence Type Exemplar sequence
Representative Public ID CEC1733 NCBI
Target Description CEC1733_rc /REP_DB=TREMBL Accession /GB=C11173 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk165c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067419(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067419 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-15) (flp-15) mRNA, complete cds. 9/11 A 
ZK525.1 ENSEMBL cdna:known chromosome:CEL140:III:13662930:13667354:-1 gene:ZK525.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034992 7/11 Cross Hyb Matching Probes None
GENEFINDER00000034996 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13663003-13663574(-) 83.61 83.61
Public Domain and Genome References
Gene Title
Gene Symbol flp-15
Ensembl ZK525.1
Entrez Gene 176803 Entrez gene
SwissProt O46023 EMBL-EBI
WormBase CE16731 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05022 Hypothetical protein ZK525.1 [Caenorhabditis elegans] ref|NP_499820.1| FMRF-Like Peptide family member (flp-15) [Caenorhabditis elegans] 4.0E-44
blast CAE71340 Hypothetical protein CBG18242 [Caenorhabditis briggsae] 2.0E-32
Sequence
Target Sequence 
>C. ELEGANS:171849_X_AT
gcggttttggcaattgcaacacttgcagattacgacgacaattcggtcggaacaatccca
gtggctgttgatttggactacttttccaattacgtaaagaaaggcggaccccagggacca
cttcgattcggaaaacgacgtggaccatctggacctctccgttttggaaagcgatcatca
ttccacgtggcacctgctgctgaagacgtcgcgtcgtggtaccagtaaataatttggaga
gcggtcattttcttgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGTTTTGGCAATTGCAACACTTG 84 293 26 Antisense
GCAACACTTGCAGATTACGACGACA 477 319 41 Antisense
ATTCGGTCGGAACAATCCCAGTGGC 213 9 66 Antisense
GTGGCTGTTGATTTGGACTACTTTT 471 491 86 Antisense
GACCACTTCGATTCGGAAAACGACG 129 383 141 Antisense
AAAACGACGTGGACCATCTGGACCT 513 131 157 Antisense
TGGACCTCTCCGTTTTGGAAAGCGA 50 549 175 Antisense
GGAAAGCGATCATCATTCCACGTGG 605 525 191 Antisense
CTGCTGCTGAAGACGTCGCGTCGTG 62 235 219 Antisense
ACGTCGCGTCGTGGTACCAGTAAAT 130 93 231 Antisense
TTGGAGAGCGGTCATTTTCTTGCCA 254 709 259 Antisense
Sequence Source Affymetrix Proprietary Database