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[171848_x_at]

Description CEC5563_rc /REP_DB=TREMBL Accession /GB=C10556 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk148h9 : 3prime end, single read.
Cluster 6grp_total > 98      4grp_total > 41      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 54.2
(0.8)
A 		41.8
(-1.1)
A 		68.7
(3)
A 		29
(-3)
A 		40
B 11
(-3)
A 		62.7
(3)
A 		39.8
(0.3)
A 		58.6
(2.5)
A 		52
C 30
(-3)
A 		69.9
(2.4)
A 		74.7
(3)
A 		51.7
(-0.1)
A 		45
avr 31.7
(-3) 		58.1
(2.4) 		61.1
(3) 		46.4
(-0) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 49
(-1.8)
A 		4.4
(-3)
A 		40.4
(-2.1)
A 		36.3
(-2.2)
A 		187.9
(1.8)
A 		235.1
(3)
A 		231
B 78.5
(-1.6)
A 		44.8
(-2.7)
A 		37.5
(-3)
A 		81.9
(-1.5)
A 		187.5
(2.1)
A 		212.6
(3)
A 		175
C 60.6
(-2.3)
A 		61.8
(-2.3)
A 		31.5
(-3)
A 		67.9
(-2.1)
A 		137.9
(-0.4)
A 		275.8
(3)
A 		244
avr 62.7
(-2.2) 		37
(-3) 		36.5
(-3) 		62
(-2.3) 		171.1
(0.9) 		241.2
(3) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 19.7
(3)
A 		9.1
(-1.1)
A 		18
(2.3)
A 		4.2
(-3)
A 		16
B 3.5
(-3)
A 		15.5
(3)
A 		9.2
(-0.2)
A 		12.5
(1.5)
A 		12
C 9.9
(-2.6)
A 		20.1
(0.9)
A 		26.1
(3)
A 		8.7
(-3)
A 		17
avr 11
(-1.4) 		14.9
(1.1) 		17.8
(3) 		8.5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 9
(-2.2)
A 		1.6
(-3)
A 		8.8
(-2.2)
A 		9.2
(-2.2)
A 		56.7
(2.9)
A 		57.2
(3)
A 		56
B 27.3
(-1.4)
A 		14.9
(-2.5)
A 		9.1
(-3)
A 		21.7
(-1.9)
A 		76.2
(2.7)
A 		79.3
(3)
A 		70
C 22.5
(-2)
A 		18.9
(-2.2)
A 		8
(-3)
A 		13.7
(-2.6)
A 		44.6
(-0.4)
A 		92.3
(3)
A 		84
avr 19.6
(-2) 		11.8
(-2.7) 		8.6
(-3) 		14.9
(-2.4) 		59.2
(1.5) 		76.3
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171848_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27752
Sequence Type Exemplar sequence
Representative Public ID CEC5563 NCBI
Target Description CEC5563_rc /REP_DB=TREMBL Accession /GB=C10556 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk148h9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063342, NM_063343
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000019068 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8270530:8273464:1 None
SNAP00000019056 ENSEMBL cdna:SNAP chromosome:CEL140:II:8270530:8273464:1 None
K01C8.3b ENSEMBL cdna:known chromosome:CEL140:II:8270530:8273506:1 gene:K01C8.3 A 
NM_063343 NCBI Caenorhabditis elegans Tyrosin DeCarboxylase family member (tdc-1) (tdc-1) mRNA, complete cds. A 
K01C8.3a ENSEMBL cdna:known chromosome:CEL140:II:8270530:8273083:1 gene:K01C8.3 A 
NM_063342 NCBI Caenorhabditis elegans Tyrosin DeCarboxylase family member (tdc-1) (tdc-1) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8272783-8273076(+) 84.69 91.53
Public Domain and Genome References
Ensembl K01C8.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42319 Hypothetical protein K01C8.3b [Caenorhabditis elegans] ref|NP_495743.1| Tyrosin DeCarboxylase family member (tdc-1) [Caenorhabditis elegans] 0.0
blast CAE57674 Hypothetical protein CBG00668 [Caenorhabditis briggsae] 0.0
blast CAA88862 Hypothetical protein K01C8.3a [Caenorhabditis elegans] ref|NP_495744.1| Tyrosin DeCarboxylase family member (tdc-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 1.0E-126
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 1.0E-126
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:171848_X_AT
caccttggagaggcgcctctcgaaggaagagattctagctcnnnnncaacacgagagcct
tgcgaagaagaggtatacacctcaaccngcttgatcttgcacttgcacccgattcagatc
cggaactttcaccttgctccccacagatattggtttcgtaatgtgattcgtatacatttt
agttccattgannnnnaaatttattgcatgtcactcctacattatttgttattctagtat
tcac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCTTGGAGAGGCGCCTCTCGAAG 63 203 17 Antisense
GGCGCCTCTCGAAGGAAGAGATTCT 244 543 28 Antisense
CAACACGAGAGCCTTGCGAAGAAGA 325 187 63 Antisense
ACTTGCACCCGATTCAGATCCGGAA 672 103 117 Antisense
GATTCAGATCCGGAACTTTCACCTT 336 431 127 Antisense
CCTTGCTCCCCACAGATATTGGTTT 500 269 148 Antisense
ATTGGTTTCGTAATGTGATTCGTAT 626 3 165 Antisense
GATTCGTATACATTTTAGTTCCATT 214 433 181 Antisense
AAATTTATTGCATGTCACTCCTACA 551 115 213 Antisense
GTCACTCCTACATTATTTGTTATTC 560 465 226 Antisense
CATTATTTGTTATTCTAGTATTCAC 325 215 236 Antisense
Sequence Source Affymetrix Proprietary Database