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[171845_x_at]

Description C35053_rc /REP_DB=TREMBL Accession /GB=C35053 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk423a11 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 01      4grp_high_8_8 > 43      6grp_total > 08      4grp_total > 53      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 86.5
(3)
P 		34.7
(-3)
A 		69.3
(1)
P 		50.7
(-1.1)
P 		52
B 84.3
(3)
P 		75.2
(1.4)
P 		50.4
(-3)
P 		56
(-2)
P 		34
C 77.9
(0)
P 		107.5
(3)
P 		77.9
(0)
P 		47.9
(-3)
A 		60
avr 82.9
(3) 		72.5
(1) 		65.9
(-0.2) 		51.5
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 76.8
(3)
P 		49.2
(-2.2)
M 		75.5
(2.8)
P 		54
(-1.3)
P 		48.2
(-2.4)
A 		45.2
(-3)
M 		32
B 70.6
(3)
P 		51
(0.1)
P 		46.2
(-0.6)
P 		68.1
(2.6)
P 		29.7
(-3)
A 		47.8
(-0.3)
P 		41
C 78.3
(3)
P 		67.3
(1.2)
M 		60.2
(0)
P 		64.9
(0.8)
P 		42.5
(-2.9)
P 		42.1
(-3)
P 		36
avr 75.2
(3) 		55.8
(-0.3) 		60.6
(0.5) 		62.3
(0.8) 		40.1
(-3) 		45
(-2.2) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 31.5
(3)
P 		7.5
(-3)
A 		18.1
(-0.3)
P 		7.4
(-3)
P 		24
B 26.9
(3)
P 		18.6
(-0.3)
P 		11.7
(-3)
P 		11.9
(-2.9)
P 		15
C 25.8
(1.7)
P 		30.9
(3)
P 		27.2
(2)
P 		8.1
(-3)
A 		23
avr 28.1
(3) 		19
(0.1) 		19
(0.1) 		9.1
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 14.1
(-0.1)
P 		17.5
(3)
M 		16.4
(2)
P 		13.7
(-0.5)
P 		14.5
(0.2)
A 		11
(-3)
M 		7
B 24.6
(3)
P 		17
(-0.4)
P 		11.2
(-3)
P 		18
(0)
P 		12.1
(-2.6)
A 		17.8
(-0)
P 		13
C 29
(3)
P 		20.5
(-0.2)
M 		15.3
(-2.2)
P 		13.1
(-3)
P 		13.8
(-2.7)
P 		14.1
(-2.6)
P 		16
avr 22.6
(3) 		18.3
(0.2) 		14.3
(-2.5) 		14.9
(-2.1) 		13.5
(-3) 		14.3
(-2.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171845_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28045
Sequence Type Exemplar sequence
Representative Public ID C35053 NCBI
Target Description C35053_rc /REP_DB=TREMBL Accession /GB=C35053 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk423a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C35053
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C35053 C35053_rc /REP_DB=TREMBL Accession /GB=C35053 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk423a11 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:171845_X_AT
accaaagcattgacaaaaggattttangggtaannnnnactgnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttgttttcagaattcattccaat
ttgccatacctttcaattt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAAAGCATTGACAAAAGGATTTT 6 85 120 Antisense
TTTGTTTTCAGAATTCATTCCAATT 404 667 216 Antisense
GTTTTCAGAATTCATTCCAATTTGC 8 449 219 Antisense
TTCAGAATTCATTCCAATTTGCCAT 379 685 222 Antisense
CAGAATTCATTCCAATTTGCCATAC 609 203 224 Antisense
GAATTCATTCCAATTTGCCATACCT 49 325 226 Antisense
AATTCATTCCAATTTGCCATACCTT 626 175 227 Antisense
TTCATTCCAATTTGCCATACCTTTC 252 689 229 Antisense
TCATTCCAATTTGCCATACCTTTCA 467 619 230 Antisense
ATTCCAATTTGCCATACCTTTCAAT 175 7 232 Antisense
TCCAATTTGCCATACCTTTCAATTT 286 587 234 Antisense
Sequence Source Affymetrix Proprietary Database