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[171844_x_at]

Description CEC5963_rc /REP_DB=TREMBL Accession /GB=C10596 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk149h8 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 85      4grp_high_8_8 > 23      6grp_total > 99      4grp_total > 08      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 82.2
(-3)
P 		124.6
(0.5)
M 		112.5
(-0.5)
A 		155.3
(3)
P 		73
B 76.5
(-1.4)
P 		51
(-3)
A 		114.1
(1.1)
A 		143.8
(3)
P 		93
C 76.8
(-3)
P 		93.6
(-1.6)
P 		105.3
(-0.6)
P 		148
(3)
P 		71
avr 78.5
(-3) 		89.7
(-2) 		110.6
(-0.3) 		149
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 110.7
(-0.7)
P 		72.4
(-3)
P 		138.4
(0.9)
P 		89
(-2)
A 		131.1
(0.5)
P 		173.3
(3)
P 		101
B 87.8
(-1.2)
P 		90.3
(-1.1)
P 		61.9
(-3)
A 		90.9
(-1)
P 		150.4
(3)
P 		111.5
(0.4)
P 		89
C 70.1
(-1.6)
P 		107.4
(2.2)
P 		57
(-3)
A 		103.2
(1.8)
M 		115.2
(3)
P 		104.1
(1.9)
P 		58
avr 89.5
(-2.5) 		90
(-2.5) 		85.8
(-3) 		94.4
(-1.9) 		132.2
(3) 		129.6
(2.7) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 29.9
(3)
P 		27
(0.6)
M 		29.4
(2.6)
A 		22.7
(-3)
P 		7
B 24.4
(0.9)
P 		12.6
(-3)
A 		26.4
(1.6)
A 		30.6
(3)
P 		18
C 25.4
(-2.8)
P 		26.9
(-2)
P 		36.7
(3)
P 		25
(-3)
P 		12
avr 26.6
(0.1) 		22.2
(-3) 		30.8
(3) 		26.1
(-0.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 20.4
(-3)
P 		25.8
(-1.5)
P 		30.1
(-0.3)
P 		22.6
(-2.4)
A 		39.6
(2.3)
P 		42.2
(3)
P 		22
B 30.5
(-1)
P 		30.1
(-1)
P 		15
(-3)
A 		24.1
(-1.8)
P 		61.1
(3)
P 		41.6
(0.5)
P 		46
C 26
(0)
P 		32.8
(1.8)
P 		14.5
(-3)
A 		20.8
(-1.3)
M 		37.3
(3)
P 		34.8
(2.3)
P 		23
avr 25.6
(-1.7) 		29.6
(-0.8) 		19.9
(-3) 		22.5
(-2.4) 		46
(3) 		39.5
(1.5) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171844_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27804
Sequence Type Exemplar sequence
Representative Public ID CEC5963 NCBI
Target Description CEC5963_rc /REP_DB=TREMBL Accession /GB=C10596 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk149h8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067842
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067842 NCBI Caenorhabditis elegans Y94H6A.3 (Y94H6A.3) mRNA, complete cds. A 
GENEFINDER00000003288 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2676627:2678068:1 None
Y94H6A.3 ENSEMBL cdna:known chromosome:CEL140:IV:2676510:2678145:1 gene:Y94H6A.3 A 
SNAP00000003278 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2676550:2680279:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2677026-2678096(+) 83.44 83.44
Public Domain and Genome References
Gene Title
Ensembl Y94H6A.3
Entrez Gene 177052 Entrez gene
SwissProt Q9N2X1 EMBL-EBI
WormBase CE27552 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60894 Hypothetical protein Y94H6A.3 [Caenorhabditis elegans] ref|NP_500243.1| Y94H6A.3 [Caenorhabditis elegans] 3.0E-71
blast AAF60894 Hypothetical protein Y94H6A.3 [Caenorhabditis elegans] ref|NP_500243.1| Y94H6A.3 [Caenorhabditis elegans] 9.0E-69
blast AAF60894 Hypothetical protein Y94H6A.3 [Caenorhabditis elegans] ref|NP_500243.1| Y94H6A.3 [Caenorhabditis elegans] 2.0E-53
blast CAE73912 Hypothetical protein CBG21521 [Caenorhabditis briggsae] 3.0E-44
blast CAE73912 Hypothetical protein CBG21521 [Caenorhabditis briggsae] 3.0E-42
blast CAE73912 Hypothetical protein CBG21521 [Caenorhabditis briggsae] 5.0E-32
Sequence
Target Sequence 
>C. ELEGANS:171844_X_AT
gacaattctcacgactcggcaatcttcggaccagcgtgggaaagtgcagagcagagagaa
gtcatcgataagaagcaatccgacatttccaccatcacattgccctcggctccggctccn
ccgncaaatgcgatggctccgatggtcccaagtcanatgtactcggagcacagcgccaca
ngaaaagccgactggaaagtcttctgggccacc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATTCTCACGACTCGGCAATCT 26 365 46 Antisense
CAATTCTCACGACTCGGCAATCTTC 32 181 48 Antisense
GCAATCTTCGGACCAGCGTGGGAAA 264 323 64 Antisense
ATCTTCGGACCAGCGTGGGAAAGTG 108 3 67 Antisense
GGACCAGCGTGGGAAAGTGCAGAGC 53 523 73 Antisense
CAGCGTGGGAAAGTGCAGAGCAGAG 474 199 77 Antisense
GTGCAGAGCAGAGAGAAGTCATCGA 479 479 89 Antisense
GAAGTCATCGATAAGAAGCAATCCG 137 335 103 Antisense
TAAGAAGCAATCCGACATTTCCACC 17 639 114 Antisense
AAGCCGACTGGAAAGTCTTCTGGGC 284 147 230 Antisense
CGACTGGAAAGTCTTCTGGGCCACC 526 251 234 Antisense
Sequence Source Affymetrix Proprietary Database