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[171842_x_at]

Description CEK002C8R_rc /REP_DB=TREMBL Accession /GB=D27426 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk2c8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 39      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 77      6grp_total > 39      4grp_total > 62      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 585
1 2 3 4 range
A 1453.1
(3)
P 		1312.7
(1.2)
P 		1270.4
(0.6)
P 		994.6
(-3)
P 		459
B 1133.9
(0.9)
P 		1113.7
(0.2)
P 		1191.8
(3)
P 		1025
(-3)
P 		167
C 1380.9
(3)
P 		921.7
(-2.4)
P 		1162.8
(0.4)
P 		868.5
(-3)
P 		512
avr 1322.6
(3) 		1116
(-0.4) 		1208.3
(1.1) 		962.7
(-3) 		360

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 799
1 2 3 4 5 6 range
A 1614
(3)
P 		1393.5
(0.8)
P 		1021.5
(-3)
P 		1066.6
(-2.5)
P 		1284.5
(-0.3)
P 		1445.5
(1.3)
P 		593
B 1524.4
(3)
P 		1195.6
(-0.9)
P 		1015.5
(-3)
P 		1273.2
(0)
P 		1095.9
(-2.1)
P 		1375.9
(1.2)
P 		509
C 1686.3
(3)
P 		1047.4
(-1.8)
P 		1173.3
(-0.9)
P 		886.9
(-3)
P 		1297.8
(0.1)
P 		1439.6
(1.1)
P 		799
avr 1608.2
(3) 		1212.2
(-1.4) 		1070.1
(-3) 		1075.6
(-2.9) 		1226.1
(-1.3) 		1420.3
(0.9) 		538
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 384
1 2 3 4 range
A 529.1
(3)
P 		285
(-0.8)
P 		332.1
(-0.1)
P 		145.6
(-3)
P 		384
B 361.6
(3)
P 		275.1
(-0.6)
P 		276.2
(-0.6)
P 		218.4
(-3)
P 		143
C 457.1
(3)
P 		265
(-0.7)
P 		405.3
(2)
P 		146.4
(-3)
P 		311
avr 449.3
(3) 		275
(-0.7) 		337.9
(0.6) 		170.1
(-3) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 447
1 2 3 4 5 6 range
A 297.5
(-1.4)
P 		495.6
(3)
P 		222.5
(-3)
P 		270.5
(-1.9)
P 		387.6
(0.6)
P 		351.9
(-0.2)
P 		273
B 530.4
(3)
P 		398
(0.2)
P 		246.6
(-3)
P 		337.2
(-1.1)
P 		445.2
(1.2)
P 		513.1
(2.6)
P 		284
C 625
(3)
P 		319.6
(-1.1)
P 		298.6
(-1.4)
P 		178.4
(-3)
P 		419.9
(0.2)
P 		481.9
(1.1)
P 		447
avr 484.3
(3) 		404.4
(0.9) 		255.9
(-3) 		262
(-2.8) 		417.6
(1.2) 		449
(2.1) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171842_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27631
Sequence Type Exemplar sequence
Representative Public ID CEK002C8R NCBI
Target Description CEK002C8R_rc /REP_DB=TREMBL Accession /GB=D27426 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk2c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066812(10), NM_001027543(10), NM_001027542(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066812 NCBI Caenorhabditis elegans ALIX (Apoptosis-linked gene 2 interacting protein X) homolog family member (alx-1) (alx-1) mRNA, complete cds. 10/11 A 
NM_001027543 NCBI Caenorhabditis elegans ALIX (Apoptosis-linked gene 2 interacting protein X) homolog family member (alx-1) (alx-1) mRNA, complete cds. 10/11 None
NM_001027542 NCBI Caenorhabditis elegans ALIX (Apoptosis-linked gene 2 interacting protein X) homolog family member (alx-1) (alx-1) mRNA, complete cds. 10/11 None
R10E12.1a ENSEMBL cdna:known chromosome:CEL140:III:9957249:9963020:1 gene:R10E12.1 10/11 A 
R10E12.1b ENSEMBL cdna:known chromosome:CEL140:III:9957250:9962978:1 gene:R10E12.1 10/11 A 
R10E12.1c ENSEMBL cdna:known chromosome:CEL140:III:9957250:9963006:1 gene:R10E12.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027544 5/11 Cross Hyb Matching Probes None
SNAP00000019728 5/11 Cross Hyb Matching Probes None
GENEFINDER00000019731 5/11 Cross Hyb Matching Probes None
R10E12.1d 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176410 4 3 NM_001027542 171842_x_at (10), 187403_at (10)
NM_001027543 171842_x_at (10)
NM_066812 171842_x_at (10), 187403_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9962647-9963001(+) 84.01 84.01
Public Domain and Genome References
Ensembl R10E12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82667 Hypothetical protein R10E12.1a [Caenorhabditis elegans] ref|NP_499213.1| ALIX (Apoptosis-linked gene 2 interacting protein X) homolog family member (alx-1) [Caenorhabditis elegans] sp|P34552|PQN58_CAEEL Protein pqn-58 (Protein YNK1) gb|AAC67305.1| YNK1-a [Caenorhabditis elegans] 0.0
blast CAD54152 Hypothetical protein R10E12.1b [Caenorhabditis elegans] ref|NP_001022713.1| ALIX (Apoptosis-linked gene 2 interacting protein X) homolog family member (alx-1) [Caenorhabditis elegans] 0.0
blast CAD54153 Hypothetical protein R10E12.1c [Caenorhabditis elegans] ref|NP_001022714.1| ALIX (Apoptosis-linked gene 2 interacting protein X) homolog family member (alx-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004328 EMBL-EBI BRO1 3.1E-89
Sequence
Target Sequence 
>C. ELEGANS:171842_X_AT
acaagccaatgccatacgggccaaccgcaaccaatgttccaacccacagtaccaaccgac
atttgcggctccttatccaacattccctggcgcctttccttcataccaacaacaatggcc
tcaacagcaacagcaaggaggatttccaccaaatccacaatttggacaaccaaatcagca
gcaaggaggtggtggtggcgccaatccattccaatagacaatcatcttgcatcccctgta
gatactccatgtatactcccaagtgtttctacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGCCAATGCCATACGGGCCAAC 30 113 55 Antisense
AGTACCAACCGACATTTGCGGCTCC 417 1 102 Antisense
CCTTTCCTTCATACCAACAACAATG 285 269 147 Antisense
CAATGGCCTCAACAGCAACAGCAAG 209 183 167 Antisense
GGAGGATTTCCACCAAATCCACAAT 550 515 191 Antisense
GCAGCAAGGAGGTGGTGGTGGCGCC 72 313 232 Antisense
TGGCGCCAATCCATTCCAATAGACA 9 545 250 Antisense
AATAGACAATCATCTTGCATCCCCT 478 173 267 Antisense
CATCCCCTGTAGATACTCCATGTAT 139 211 284 Antisense
ATACTCCATGTATACTCCCAAGTGT 118 23 296 Antisense
ATGTATACTCCCAAGTGTTTCTACC 705 47 303 Antisense
Sequence Source Affymetrix Proprietary Database