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[171839_x_at] zinc finger protein

Description C33647_rc /REP_DB=TREMBL Accession /GB=C33647 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk375a11 : 3prime end, single read.
Cluster 6grp_total > 08      4grp_total > 35      6grp_cgc > 0      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 1.8
(-3)
A 		29.6
(3)
A 		20.3
(1)
A 		3.7
(-2.6)
A 		28
B 29.4
(1.8)
P 		36.3
(3)
A 		0.6
(-3)
A 		25.5
(1.2)
A 		36
C 38.1
(-1.2)
A 		29.2
(-2.9)
A 		28.7
(-3)
A 		59.3
(3)
A 		31
avr 23.1
(-0.4) 		31.7
(3) 		16.5
(-3) 		29.5
(2.1) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 31.4
(1.4)
A 		12.8
(-2.3)
A 		31
(1.3)
A 		34.8
(2.1)
A 		9.4
(-3)
A 		39.3
(3)
A 		30
B 27.2
(-0.2)
A 		20.5
(-2.4)
A 		18.7
(-3)
A 		36.9
(3)
A 		19.2
(-2.8)
A 		19.3
(-2.8)
A 		18
C 26.3
(3)
P 		21.1
(1.7)
A 		12.7
(-0.5)
A 		2.7
(-3)
A 		19.3
(1.2)
A 		11.3
(-0.8)
A 		24
avr 28.3
(3) 		18.1
(-2) 		20.8
(-0.7) 		24.8
(1.3) 		16
(-3) 		23.3
(0.6) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.7
(-2.8)
A 		6.4
(3)
A 		5.3
(1.9)
A 		0.5
(-3)
A 		6
B 9.4
(3)
P 		9
(2.7)
A 		0.1
(-3)
A 		5.4
(0.4)
A 		9
C 12.6
(3)
A 		8.4
(-3)
A 		10
(-0.7)
A 		10
(-0.7)
A 		4
avr 7.6
(2.4) 		7.9
(3) 		5.1
(-3) 		5.3
(-2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 5.8
(-0.4)
A 		4.6
(-1.4)
A 		6.7
(0.4)
A 		8.8
(2.3)
A 		2.8
(-3)
A 		9.6
(3)
A 		7
B 9.5
(2.7)
A 		6.8
(-0.4)
A 		4.5
(-3)
A 		9.8
(3)
A 		7.8
(0.7)
A 		7.2
(0.1)
A 		5
C 9.7
(3)
P 		6.4
(0.8)
A 		3.2
(-1.2)
A 		0.5
(-3)
A 		6.3
(0.8)
A 		3.8
(-0.8)
A 		9
avr 8.3
(3) 		5.9
(-1.1) 		4.8
(-3) 		6.4
(-0.3) 		5.6
(-1.6) 		6.9
(0.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171839_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27756
Sequence Type Exemplar sequence
Representative Public ID C33647 NCBI
Target Description C33647_rc /REP_DB=TREMBL Accession /GB=C33647 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk375a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058310
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058310 NCBI Caenorhabditis elegans C53D5.4 (C53D5.4) mRNA, complete cds. None
C53D5.4 ENSEMBL cdna:known chromosome:CEL140:I:286156:289075:-1 gene:C53D5.4 None
GENEFINDER00000029152 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:286352:289075:-1 None
SNAP00000029140 ENSEMBL cdna:SNAP chromosome:CEL140:I:286352:289075:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:286155-286420(-) 79.8 81.79
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol ztf-3
Ensembl C53D5.4
Entrez Gene 171617 Entrez gene
SwissProt Q9N5V6 EMBL-EBI
WormBase CE28215 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39786 Hypothetical protein C53D5.4 [Caenorhabditis elegans] ref|NP_490711.1| C53D5.4 [Caenorhabditis elegans] 1.0E-167
blast AAF39786 Hypothetical protein C53D5.4 [Caenorhabditis elegans] ref|NP_490711.1| C53D5.4 [Caenorhabditis elegans] 1.0E-158
blast AAF39786 Hypothetical protein C53D5.4 [Caenorhabditis elegans] ref|NP_490711.1| C53D5.4 [Caenorhabditis elegans] 1.0E-155
blast CAE74352 Hypothetical protein CBG22071 [Caenorhabditis briggsae] 8.0E-30
blast CAE74352 Hypothetical protein CBG22071 [Caenorhabditis briggsae] 1.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 7.0E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.4E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-4
Sequence
Target Sequence 
>C. ELEGANS:171839_X_AT
acatcagagaagcacaccatgcaccaaataccagaatttaaccactgtggaacacgatga
caccggagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaaan
nnnngcatttatttnttccaatttcctcgccnnnnncacatttattacgagttttccgag
aaagggtaatcgatatatcgctaaaatttcaaattccacgtgttttaatgtaaataggct

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCAGAGAAGCACACCATGCACC 510 105 39 Antisense
AGAAGCACACCATGCACCAAATACC 164 75 46 Antisense
CACACCATGCACCAAATACCAGAAT 481 195 51 Antisense
GCACCAAATACCAGAATTTAACCAC 248 227 59 Antisense
TACCAGAATTTAACCACTGTGGAAC 418 649 67 Antisense
ACTGTGGAACACGATGACACCGGAG 593 97 82 Antisense
CACATTTATTACGAGTTTTCCGAGA 675 195 195 Antisense
GAGAAAGGGTAATCGATATATCGCT 90 383 216 Antisense
ATCGATATATCGCTAAAATTTCAAA 527 35 227 Antisense
ATTTCAAATTCCACGTGTTTTAATG 20 3 244 Antisense
CCACGTGTTTTAATGTAAATAGGCT 185 275 254 Antisense
Sequence Source Affymetrix Proprietary Database