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[171836_x_at]

Description CEC621_rc /REP_DB=TREMBL Accession /GB=C07621 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk143e9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 05      6grp_total > 02      4grp_total > 60      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6490
1 2 3 4 range
A 7964.2
(3)
P 		4119.1
(-0.7)
P 		6602.5
(1.7)
P 		1658.5
(-3)
P 		6306
B 2411.5
(-3)
P 		5793.2
(3)
P 		3203.8
(-1.6)
P 		4820.6
(1.3)
P 		3382
C 5613.7
(0.3)
P 		5849.5
(0.5)
P 		8148.3
(3)
P 		2541.4
(-3)
P 		5607
avr 5329.8
(1.7) 		5253.9
(1.5) 		5984.9
(3) 		3006.8
(-3) 		2978

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7555
1 2 3 4 5 6 range
A 3559.9
(-1.6)
P 		5531.8
(1.8)
P 		6225.4
(3)
P 		4619.7
(0.2)
P 		5120.1
(1.1)
P 		2734.6
(-3)
P 		3491
B 10289.8
(3)
P 		9349.6
(2.2)
P 		3604.3
(-3)
P 		5361.6
(-1.4)
P 		7069.3
(0.1)
P 		6058
(-0.8)
P 		6686
C 6462.6
(1.7)
P 		7320.6
(3)
P 		3391.1
(-3)
P 		4786
(-0.9)
P 		4275.4
(-1.6)
P 		5627.9
(0.4)
P 		3930
avr 6770.8
(1.7) 		7400.7
(3) 		4406.9
(-3) 		4922.4
(-2) 		5488.3
(-0.8) 		4806.8
(-2.2) 		2994
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2657
1 2 3 4 range
A 2899.8
(3)
P 		894.1
(-1.5)
P 		1726
(0.3)
P 		242.8
(-3)
P 		2657
B 769
(-2.8)
P 		1430.8
(3)
P 		742.4
(-3)
P 		1027.3
(-0.5)
P 		688
C 1858.3
(0.6)
P 		1681.8
(0.1)
P 		2839.9
(3)
P 		428.5
(-3)
P 		2411
avr 1842.4
(3) 		1335.6
(0.6) 		1769.4
(2.7) 		566.2
(-3) 		1276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2924
1 2 3 4 5 6 range
A 656.2
(-3)
P 		1967.4
(3)
P 		1355.8
(0.2)
P 		1171.7
(-0.6)
P 		1545
(1.1)
P 		665.8
(-3)
P 		1311
B 3580.4
(3)
P 		3112.1
(2)
P 		875.2
(-3)
P 		1420.1
(-1.8)
P 		2872.2
(1.4)
P 		2259
(0.1)
P 		2705
C 2395.4
(3)
P 		2233.7
(2.4)
P 		863.1
(-3)
P 		962.5
(-2.6)
P 		1383.4
(-1)
P 		1884
(1)
P 		1532
avr 2210.7
(2) 		2437.7
(3) 		1031.4
(-3) 		1184.8
(-2.3) 		1933.5
(0.8) 		1602.9
(-0.6) 		1406
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171836_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27839
Sequence Type Exemplar sequence
Representative Public ID CEC621 NCBI
Target Description CEC621_rc /REP_DB=TREMBL Accession /GB=C07621 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk143e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073689
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000007840 ENSEMBL cdna:SNAP chromosome:CEL140:V:12321215:12322583:1 None
NM_073689 NCBI Caenorhabditis elegans R04F11.2 (R04F11.2) mRNA, complete cds. A 
R04F11.2.1 ENSEMBL cdna:known chromosome:CEL140:V:12320973:12322795:1 gene:R04F11.2 A 
R04F11.2.4 ENSEMBL cdna:known chromosome:CEL140:V:12321213:12323075:1 gene:R04F11.2 A 
GENEFINDER00000007847 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12321215:12322583:1 None
R04F11.2.2 ENSEMBL cdna:known chromosome:CEL140:V:12321213:12322809:1 gene:R04F11.2 A 
R04F11.2.3 ENSEMBL cdna:known chromosome:CEL140:V:12321215:12322795:1 gene:R04F11.2 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12321555-12322767(+) 88.03 88.03
Public Domain and Genome References
Gene Title
Ensembl R04F11.2
Entrez Gene 179690 Entrez gene
SwissProt Q21732 EMBL-EBI
WormBase CE06233 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98960 Hypothetical protein R04F11.2 [Caenorhabditis elegans] ref|NP_506090.1| R04F11.2 [Caenorhabditis elegans] 2.0E-42
blast CAE75457 Hypothetical protein CBG23452 [Caenorhabditis briggsae] 2.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR008386 EMBL-EBI ATP synthase E 2.1E-53
Sequence
Target Sequence 
>C. ELEGANS:171836_X_AT
agtgggatgcacgaaaagtctgtttcctctccagaggaagnnnnnnagaagaagaagtgt
cttcccaaggacgagatgagatacctcatgcaggttgtcaacattcctttcgaagaggga
gtcaaccaattcggagttgccgatctctacaaggaggattaagacgacggtcacgaagac
acactatcagacccaggannnnnnnnnnnnnnnnnnnnnnnnnnnncaatgaatacctct
ccgaaacagagacat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGGGATGCACGAAAAGTCTGTTT 419 59 17 Antisense
CGAAAAGTCTGTTTCCTCTCCAGAG 138 253 28 Antisense
GAAGTGTCTTCCCAAGGACGAGATG 582 335 70 Antisense
GAGATACCTCATGCAGGTTGTCAAC 334 397 94 Antisense
GGTTGTCAACATTCCTTTCGAAGAG 589 507 109 Antisense
GAGTCAACCAATTCGGAGTTGCCGA 319 399 135 Antisense
GAGTTGCCGATCTCTACAAGGAGGA 461 397 150 Antisense
CAAGGAGGATTAAGACGACGGTCAC 575 157 166 Antisense
GACGGTCACGAAGACACACTATCAG 217 375 182 Antisense
CGAAGACACACTATCAGACCCAGGA 204 253 190 Antisense
GAATACCTCTCCGAAACAGAGACAT 292 325 247 Antisense
Sequence Source Affymetrix Proprietary Database