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[171834_x_at]

Description CEC769_rc /REP_DB=TREMBL Accession /GB=C07769 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk166a2 : 3prime end, single read.
Cluster 6grp_total > 06      4grp_total > 06      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 141.6
(2.3)
M 		36.2
(-3)
A 		122.8
(1.3)
P 		155.8
(3)
P 		120
B 103.1
(-0.3)
P 		78.8
(-2.2)
A 		67.9
(-3)
A 		146.1
(3)
A 		78
C 76.2
(-0.5)
M 		75.3
(-0.7)
A 		62.6
(-3)
A 		95.5
(3)
A 		33
avr 107
(0.8) 		63.4
(-3) 		84.4
(-1.2) 		132.5
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 77.3
(1.6)
A 		53.1
(-3)
A 		65.4
(-0.7)
A 		69.5
(0.1)
A 		84.7
(3)
A 		65.8
(-0.6)
A 		32
B 83.7
(3)
P 		75.8
(2)
A 		70.5
(1.4)
A 		43.1
(-1.9)
P 		57.3
(-0.2)
A 		34.1
(-3)
A 		50
C 77.2
(3)
A 		71.3
(2.1)
P 		64.6
(1.1)
P 		60.2
(0.5)
A 		37.2
(-3)
A 		44.7
(-1.9)
A 		40
avr 79.4
(3) 		66.7
(0.6) 		66.8
(0.6) 		57.6
(-1.2) 		59.7
(-0.8) 		48.2
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 51.6
(3)
M 		7.9
(-3)
A 		32.1
(0.3)
P 		22.8
(-1)
P 		44
B 32.9
(3)
P 		19.5
(-1.7)
A 		15.7
(-3)
A 		31.1
(2.4)
A 		17
C 25.2
(3)
M 		21.7
(0.7)
A 		21.8
(0.8)
A 		16.1
(-3)
A 		9
avr 36.6
(3) 		16.4
(-3) 		23.2
(-1) 		23.3
(-1) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 14.2
(-3)
A 		18.9
(-0.5)
A 		14.2
(-3)
A 		17.6
(-1.2)
A 		25.6
(3)
A 		16
(-2.1)
A 		11
B 29.1
(3)
P 		25.2
(1.7)
A 		17.1
(-1.1)
A 		11.4
(-3)
P 		23.3
(1)
A 		12.7
(-2.6)
A 		18
C 28.6
(3)
A 		21.7
(0.5)
P 		16.5
(-1.4)
P 		12.1
(-3)
A 		12
(-3)
A 		14.9
(-2)
A 		17
avr 24
(3) 		21.9
(1.8) 		15.9
(-1.7) 		13.7
(-3) 		20.3
(0.8) 		14.5
(-2.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171834_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27698
Sequence Type Exemplar sequence
Representative Public ID CEC769 NCBI
Target Description CEC769_rc /REP_DB=TREMBL Accession /GB=C07769 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk166a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076448
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000002224 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4972883:4979561:-1 None
NM_076448 NCBI Caenorhabditis elegans ZC8.6 (ZC8.6) mRNA, complete cds. A 
ZC8.6 ENSEMBL cdna:known chromosome:CEL140:X:4972568:4997565:-1 gene:ZC8.6 A 
SNAP00000002213 ENSEMBL cdna:SNAP chromosome:CEL140:X:4972883:4973294:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4972605-4973039(-) 92.97 92.97
Public Domain and Genome References
Gene Title
Ensembl ZC8.6
Entrez Gene 180770 Entrez gene
SwissProt Q23083 EMBL-EBI
WormBase CE38988 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508849 ZC8.6 [Caenorhabditis elegans] 0.0
blast AAM69079 Hypothetical protein ZC8.6 [Caenorhabditis elegans] 0.0
blast CAE68673 Hypothetical protein CBG14577 [Caenorhabditis briggsae] 0.0
blast AAM69079 Hypothetical protein ZC8.6 [Caenorhabditis elegans] 1.0E-140
blast NP_508849 ZC8.6 [Caenorhabditis elegans] 1.0E-137
blast CAE68673 Hypothetical protein CBG14577 [Caenorhabditis briggsae] 1.0E-121
blast NP_508849 ZC8.6 [Caenorhabditis elegans] 4.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR000403 EMBL-EBI Phosphatidylinositol 3- and 4-kinase 3.0E-18
Pfam IPR000403 EMBL-EBI Phosphatidylinositol 3- and 4-kinase 5.4E-29
Pfam IPR000403 EMBL-EBI Phosphatidylinositol 3- and 4-kinase 4.0E-49
Sequence
Target Sequence 
>C. ELEGANS:171834_X_AT
ggagcagcatcatcgactggtggctccaaatcgtggcaggaaacatatgagcnnnnngtg
caaacgaaagccccgttcttccgttggtggtgattcacganntcnatagataaacaatat
tttcnacgtctatcatttcctttccccgctaaacannnnnccccttcctcgagtcaagtt
gctcttctcttgacaagtagttgatcttccatcgatacgaaggctcggctattgcttgaa
ctaaccaatattgtgtgttgtaagnttgtatatttctagcnttattcgttttccatcatt
tctaaattcctattccaattgctacctgatt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCAGCATCATCGACTGGTGGCT 237 519 76 Antisense
CTGGTGGCTCCAAATCGTGGCAGGA 651 239 92 Antisense
CGTTCTTCCGTTGGTGGTGATTCAC 88 247 149 Antisense
CTTCCTCGAGTCAAGTTGCTCTTCT 471 219 239 Antisense
AGTTGCTCTTCTCTTGACAAGTAGT 167 63 252 Antisense
GACAAGTAGTTGATCTTCCATCGAT 365 365 267 Antisense
GATCTTCCATCGATACGAAGGCTCG 214 419 278 Antisense
GATACGAAGGCTCGGCTATTGCTTG 461 423 289 Antisense
GCTCGGCTATTGCTTGAACTAACCA 651 297 298 Antisense
TTATTCGTTTTCCATCATTTCTAAA 449 677 357 Antisense
TTCCTATTCCAATTGCTACCTGATT 174 701 382 Antisense
Sequence Source Affymetrix Proprietary Database