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[171833_x_at]

Description CEC478_rc /REP_DB=TREMBL Accession /GB=C07478 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk140f1 : 3prime end, single read.
Cluster 6grp_total > 78      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 3.5
(-3)
A 		9.7
(-1.7)
A 		3.5
(-3)
A 		32.6
(3)
A 		29
B 1.5
(-3)
A 		2.3
(-2.9)
A 		4
(-2.6)
A 		35.8
(3)
A 		34
C 2.7
(-2.5)
A 		4.3
(-1.7)
A 		1.7
(-3)
A 		13.5
(3)
A 		12
avr 2.6
(-3) 		5.4
(-2.3) 		3.1
(-2.9) 		27.3
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 7.9
(-2.9)
A 		4.4
(-3)
A 		1.9
(-3)
A 		4.1
(-3)
A 		98.1
(-1.4)
A 		366.3
(3)
P 		364
B 19.7
(-2.7)
A 		2.2
(-3)
A 		2.3
(-3)
A 		2.1
(-3)
A 		69.5
(-1.8)
A 		329.8
(3)
P 		328
C 20.7
(-2.6)
A 		9.7
(-2.9)
A 		2.4
(-3)
A 		2.1
(-3)
A 		109.9
(-0.9)
A 		310.4
(3)
P 		308
avr 16.1
(-2.7) 		5.4
(-2.9) 		2.2
(-3) 		2.8
(-3) 		92.5
(-1.4) 		335.5
(3) 		333
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.3
(-2.4)
A 		2.1
(-1.2)
A 		0.9
(-3)
A 		4.8
(3)
A 		4
B 0.5
(-3)
A 		0.6
(-2.9)
A 		0.9
(-2.7)
A 		7.6
(3)
A 		7
C 0.9
(-1.9)
A 		1.2
(-0.9)
A 		0.6
(-3)
A 		2.3
(3)
A 		2
avr 0.9
(-2.9) 		1.3
(-2.3) 		0.8
(-3) 		4.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 1.5
(-2.9)
A 		1.6
(-2.9)
A 		0.4
(-3)
A 		1
(-3)
A 		29.6
(-1)
A 		89.2
(3)
P 		89
B 6.8
(-2.7)
A 		0.7
(-3)
A 		0.6
(-3)
A 		0.5
(-3)
A 		28.3
(-1.6)
A 		123
(3)
P 		123
C 7.7
(-2.6)
A 		3
(-2.8)
A 		0.6
(-3)
A 		0.4
(-3)
A 		35.6
(-1)
A 		103.9
(3)
P 		104
avr 5.3
(-2.7) 		1.8
(-2.9) 		0.5
(-3) 		0.6
(-3) 		31.2
(-1.2) 		105.4
(3) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171833_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27761
Sequence Type Exemplar sequence
Representative Public ID CEC478 NCBI
Target Description CEC478_rc /REP_DB=TREMBL Accession /GB=C07478 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk140f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063574
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C01G6.3 ENSEMBL cdna:known chromosome:CEL140:II:9269805:9271178:1 gene:C01G6.3 A 
NM_063574 NCBI Caenorhabditis elegans C01G6.3 (C01G6.3) mRNA, complete cds. A 
GENEFINDER00000013244 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9269805:9271063:1 None
SNAP00000013216 ENSEMBL cdna:SNAP chromosome:CEL140:II:9269805:9271063:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9270803-9271118(+) 79.56 79.56
Public Domain and Genome References
Gene Title
Ensembl C01G6.3
Entrez Gene 174469 Entrez gene
SwissProt Q17572 EMBL-EBI
WormBase CE37474 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84634 Hypothetical protein C01G6.3 [Caenorhabditis elegans] ref|NP_495975.2| C01G6.3 [Caenorhabditis elegans] 0.0
blast CAE57877 Hypothetical protein CBG00919 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:171833_X_AT
tgtcttcgtgctccgaactagttttggaactccanccacggaagacggatgcaccagtta
ggatgcccngataggacacctcttcacgacccggggaggacccaattcnccgaattgntg
ccggattcgcagaagattttgaagtcngacantccgacacgattgtataccactcaccga
cgtggtgtgtacatgctaagccataagcattacgatcaaggagcctgggatgccgttcga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCTTCGTGCTCCGAACTAGTTTT 305 559 14 Antisense
GCTCCGAACTAGTTTTGGAACTCCA 615 297 23 Antisense
CCACGGAAGACGGATGCACCAGTTA 19 275 49 Antisense
GACGGATGCACCAGTTAGGATGCCC 416 377 57 Antisense
GCCGGATTCGCAGAAGATTTTGAAG 258 283 133 Antisense
TCCGACACGATTGTATACCACTCAC 674 591 166 Antisense
CCACTCACCGACGTGGTGTGTACAT 53 275 183 Antisense
GACGTGGTGTGTACATGCTAAGCCA 369 377 192 Antisense
GCTAAGCCATAAGCATTACGATCAA 25 303 208 Antisense
AGCATTACGATCAAGGAGCCTGGGA 341 77 219 Antisense
TCAAGGAGCCTGGGATGCCGTTCGA 231 631 229 Antisense
Sequence Source Affymetrix Proprietary Database