[Home] | [Total List]

[171832_s_at]

Description CEC686_rc /REP_DB=TREMBL Accession /GB=C07686 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk156e2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 28      4grp_highest_8_8 > 04      4grp_high_8_8 > 29      6grp_highest_nonorm > 66      6grp_total > 18      4grp_total > 34      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 761
1 2 3 4 range
A 1541.3
(-3)
P 		2061.4
(2.2)
P 		1716.1
(-1.3)
P 		2143.2
(3)
P 		602
B 1556.9
(-3)
P 		2108.8
(1.4)
P 		2239.1
(2.5)
P 		2302.6
(3)
P 		746
C 1580.7
(-3)
P 		2183.3
(3)
P 		1710.8
(-1.7)
P 		1811.7
(-0.7)
P 		603
avr 1559.6
(-3) 		2117.8
(3) 		1888.7
(0.5) 		2085.8
(2.7) 		558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1396
1 2 3 4 5 6 range
A 1506.3
(0)
P 		1970.5
(3)
P 		1310.6
(-1.3)
P 		1330.4
(-1.1)
P 		1040
(-3)
P 		1609.6
(0.7)
P 		931
B 1386.9
(3)
P 		1160.9
(-3)
P 		1377.1
(2.7)
P 		1362
(2.3)
P 		1303.1
(0.8)
P 		1187.7
(-2.3)
P 		226
C 2436.2
(3)
P 		1150.2
(-3)
P 		2096.5
(1.4)
P 		1177.2
(-2.9)
P 		2225.2
(2)
P 		1442.6
(-1.6)
P 		1286
avr 1776.5
(3) 		1427.2
(-1.3) 		1594.7
(0.8) 		1289.9
(-3) 		1522.8
(-0.1) 		1413.3
(-1.5) 		487
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 322
1 2 3 4 range
A 561.2
(3)
P 		447.5
(0.2)
P 		448.6
(0.3)
P 		313.7
(-3)
P 		248
B 496.5
(-1.8)
P 		520.8
(3)
P 		518.9
(2.6)
P 		490.7
(-3)
P 		30
C 523.3
(1.1)
P 		627.7
(3)
P 		596.3
(2.4)
P 		305.5
(-3)
P 		322
avr 527
(2.8) 		532
(3) 		521.3
(2.6) 		370
(-3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 666
1 2 3 4 5 6 range
A 277.7
(-3)
P 		700.8
(3)
P 		285.4
(-2.9)
P 		337.4
(-2.2)
P 		313.8
(-2.5)
P 		391.9
(-1.4)
P 		423
B 482.6
(1.6)
P 		386.4
(-1.4)
P 		334.4
(-3)
P 		360.8
(-2.2)
P 		529.4
(3)
P 		442.9
(0.3)
P 		195
C 903
(3)
P 		351
(-2)
P 		533.6
(-0.3)
P 		236.7
(-3)
P 		720
(1.4)
P 		482.9
(-0.8)
P 		666
avr 554.4
(3) 		479.4
(1.1) 		384.5
(-1.2) 		311.6
(-3) 		521.1
(2.2) 		439.2
(0.2) 		243
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171832_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28011
Sequence Type Exemplar sequence
Representative Public ID CEC686 NCBI
Target Description CEC686_rc /REP_DB=TREMBL Accession /GB=C07686 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk156e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064567(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064567 NCBI Caenorhabditis elegans Y48B6A.12 (Y48B6A.12) mRNA, complete cds. 11/11 A 
SNAP00000022968 ENSEMBL cdna:SNAP chromosome:CEL140:II:14226482:14233694:-1 11/11 None
GENEFINDER00000022982 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14226482:14233694:-1 11/11 None
Y48B6A.12.3 ENSEMBL cdna:known chromosome:CEL140:II:14225833:14234011:-1 gene:Y48B6A.12 11/11 A 
Y48B6A.12.1 ENSEMBL cdna:known chromosome:CEL140:II:14226272:14233753:-1 gene:Y48B6A.12 11/11 A 
Y48B6A.12.2 ENSEMBL cdna:known chromosome:CEL140:II:14226272:14233746:-1 gene:Y48B6A.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14226370-14226617(-) 76.47 76.47
Public Domain and Genome References
Gene Title
Ensembl Y48B6A.12
Entrez Gene 175079 Entrez gene
SwissProt Q9U296 EMBL-EBI
WormBase CE22127 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15280_AT malate oxidoreductase, putative at
ATH1-121501:266690_AT malate oxidoreductase, putative at
CANINE_2:CFA.17217.1.S1_S_AT similar to malic enzyme 3, NADP(+)-dependent, mitochondrial cfa
CANINE_2:CFA.17960.1.S1_S_AT similar to malic enzyme 3, NADP(+)-dependent, mitochondrial cfa
DROSOPHILA_2:1641118_AT dm
DROSGENOME1:142303_AT dm
DROSGENOME1:151522_AT dm
HG-U133_PLUS_2:231295_AT malic enzyme 3, NADP(+)-dependent, mitochondrial hs
HG-U133B:231295_AT malic enzyme 3, NADP(+)-dependent, mitochondrial hs
HG-U133A:204663_AT malic enzyme 3, NADP(+)-dependent, mitochondrial hs
HG-U133_PLUS_2:204663_AT malic enzyme 3, NADP(+)-dependent, mitochondrial hs
HG-FOCUS:204663_AT malic enzyme 3, NADP(+)-dependent, mitochondrial hs
HG-U133A_2:204663_AT malic enzyme 3, NADP(+)-dependent, mitochondrial hs
HU35KSUBB:RC_F04296_AT malic enzyme 3, NADP(+)-dependent, mitochondrial hs
HUGENEFL:X79440_AT malic enzyme 3, NADP(+)-dependent, mitochondrial hs
U133_X3P:G5729919_3P_AT malic enzyme 3, NADP(+)-dependent, mitochondrial hs
U133_X3P:HS.169161.0.A1_3P_S_AT malic enzyme 3, NADP(+)-dependent, mitochondrial hs
U133_X3P:HS.169161.0.A1_3P_AT malic enzyme 3, NADP(+)-dependent, mitochondrial hs
HG-U95AV2:35216_AT malic enzyme 3, NADP(+)-dependent, mitochondrial hs
HG-U95B:46799_AT Malic enzyme 3, NADP(+)-dependent, mitochondrial hs
HG-U95B:47962_AT Malic enzyme 3, NADP(+)-dependent, mitochondrial hs
HG-U95E:68676_AT Malic enzyme 3, NADP(+)-dependent, mitochondrial hs
HU35KSUBD:RC_AA482557_AT Malic enzyme 3, NADP(+)-dependent, mitochondrial hs
MG-U74CV2:165808_AT malic enzyme 3, NADP(+)-dependent, mitochondrial mm
MOE430B:1429071_AT malic enzyme 3, NADP(+)-dependent, mitochondrial mm
MOUSE430_2:1429071_AT malic enzyme 3, NADP(+)-dependent, mitochondrial mm
MG-U74CV2:170559_AT Malic enzyme 3, NADP(+)-dependent, mitochondrial (Me3), mRNA mm
RG-U34C:RC_AI168991_AT malic enzyme 3, NADP(+)-dependent, mitochondrial (predicted) rn
RAE230A:1389572_AT malic enzyme 3, NADP(+)-dependent, mitochondrial (predicted) rn
RAT230_2:1389572_AT malic enzyme 3, NADP(+)-dependent, mitochondrial (predicted) rn
RAE230A:1377015_AT Malic enzyme 3, NADP(+)-dependent, mitochondrial (predicted) rn
RAT230_2:1377015_AT Malic enzyme 3, NADP(+)-dependent, mitochondrial (predicted) rn
RAE230B:1397433_AT Malic enzyme 3, NADP(+)-dependent, mitochondrial (predicted) rn
RAT230_2:1397433_AT Malic enzyme 3, NADP(+)-dependent, mitochondrial (predicted) rn
RG-U34C:RC_AI104675_AT Malic enzyme 3, NADP(+)-dependent, mitochondrial (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6108 malate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4470 malic enzyme activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54452 Hypothetical protein Y48B6A.12 [Caenorhabditis elegans] ref|NP_496968.1| Y48B6A.12 [Caenorhabditis elegans] 0.0
blast S29742 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP) (EC 1.1.1.40) - pig roundworm 0.0
blast P27443 NAD-dependent malic enzyme, mitochondrial precursor (NAD-ME) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001891 EMBL-EBI Malic oxidoreductase 1.0E-126
Pfam IPR001891 EMBL-EBI Malic oxidoreductase 3.3E-125
Pfam IPR001891 EMBL-EBI Malic oxidoreductase 4.6E-102
Pfam IPR001891 EMBL-EBI Malic oxidoreductase 7.4E-58
Sequence
Target Sequence 
>C. ELEGANS:171832_S_AT
ggaaatgttcattcgccagaacctgtacagtgttgagtatgatgagctgatcaataagac
ttacgaatggccagccaaggattcgaaacacggtttcccggttccagtgttgagaagaac
ctcgatggacgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAATGTTCATTCGCCAGAACCTG 107 527 42 Antisense
ATGTTCATTCGCCAGAACCTGTACA 396 45 46 Antisense
TCATTCGCCAGAACCTGTACAGTGT 511 619 50 Antisense
TCGCCAGAACCTGTACAGTGTTGAG 362 597 54 Antisense
GAACCTGTACAGTGTTGAGTATGAT 175 347 60 Antisense
ATGAGCTGATCAATAAGACTTACGA 20 47 83 Antisense
ATAAGACTTACGAATGGCCAGCCAA 600 23 95 Antisense
AATGGCCAGCCAAGGATTCGAAACA 58 161 107 Antisense
GGCCAGCCAAGGATTCGAAACACGG 307 543 110 Antisense
CAGCCAAGGATTCGAAACACGGTTT 709 137 113 Antisense
GTTGAGAAGAACCTCGATGGACGAG 158 435 150 Antisense
Sequence Source Affymetrix Proprietary Database