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[171831_x_at]

Description C47193_rc /REP_DB=TREMBL Accession /GB=C47193 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk433f8 : 5prime end, single read.
Cluster 6grp_total > 69      4grp_total > 43      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 180.3
(-3)
A 		284.1
(3)
P 		183.3
(-2.8)
A 		194.5
(-2.2)
A 		104
B 163.3
(-3)
P 		246.3
(3)
P 		191.7
(-0.9)
A 		168.6
(-2.6)
M 		83
C 175.5
(-2.6)
P 		330.1
(3)
P 		203
(-1.6)
P 		164.1
(-3)
A 		166
avr 173
(-3) 		286.8
(3) 		192.7
(-2) 		175.7
(-2.9) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 249.1
(0.7)
P 		155.6
(-2.2)
P 		181.8
(-1.4)
A 		131.7
(-3)
M 		218.5
(-0.2)
P 		320.8
(3)
P 		189
B 274.6
(0.7)
P 		182.1
(-2.7)
P 		245.8
(-0.4)
P 		173.1
(-3)
A 		292.7
(1.3)
P 		338.1
(3)
M 		165
C 189.3
(-0.5)
P 		212.7
(0.6)
P 		213.5
(0.7)
A 		140.3
(-3)
A 		259.4
(3)
P 		253.2
(2.7)
P 		119
avr 237.7
(0.4) 		183.5
(-1.6) 		213.7
(-0.5) 		148.4
(-3) 		256.9
(1.2) 		304
(3) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 65.7
(3)
A 		61.7
(2.4)
P 		47.9
(0.1)
A 		28.5
(-3)
A 		37
B 52.1
(0.9)
P 		60.8
(3)
P 		44.4
(-1)
A 		35.9
(-3)
M 		25
C 58.1
(-0.3)
P 		94.9
(3)
P 		70.7
(0.8)
P 		27.7
(-3)
A 		67
avr 58.6
(1) 		72.5
(3) 		54.3
(0.4) 		30.7
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 45.9
(-1.3)
P 		55.3
(-0.1)
P 		39.6
(-2.2)
A 		33.4
(-3)
M 		65.9
(1.4)
P 		78.1
(3)
P 		45
B 95.5
(0.7)
P 		60.6
(-1.9)
P 		59.7
(-2)
P 		45.8
(-3)
A 		118.9
(2.5)
P 		126.1
(3)
M 		80
C 70.2
(1.5)
P 		64.9
(0.9)
P 		54.4
(-0.2)
A 		28.2
(-3)
A 		83.9
(2.9)
P 		84.8
(3)
P 		57
avr 70.5
(0.4) 		60.3
(-0.6) 		51.2
(-1.5) 		35.8
(-3) 		89.6
(2.3) 		96.3
(3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171831_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27609
Sequence Type Exemplar sequence
Representative Public ID C47193 NCBI
Target Description C47193_rc /REP_DB=TREMBL Accession /GB=C47193 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk433f8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067866
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067866 NCBI Caenorhabditis elegans Y54G2A.18 (Y54G2A.18) mRNA, complete cds. A 
SNAP00000036498 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2891682:2892485:-1 None
Y54G2A.18.2 ENSEMBL cdna:known chromosome:CEL140:IV:2891554:2892497:-1 gene:Y54G2A.18 None
Y54G2A.18.1 ENSEMBL cdna:known chromosome:CEL140:IV:2891554:2892494:-1 gene:Y54G2A.18 None
GENEFINDER00000036616 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2891682:2892485:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2891586-2891969(-) 81.94 81.94
Public Domain and Genome References
Gene Title
Ensembl Y54G2A.18
Entrez Gene 177072 Entrez gene
SwissProt Q9N3B5 EMBL-EBI
WormBase CE25462 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1583601_AT similar to B-cell receptor-associated protein 31 (BCR-associated protein Bap31) (p28 Bap31) (CDM protein) (6C6-AG tumor-associated antigen) (DXS1357E) cfa
CANINE_2:CFA.11959.1.A1_AT similar to B-cell receptor-associated protein 31 (BCR-associated protein Bap31) (p28 Bap31) (CDM protein) (6C6-AG tumor-associated antigen) (DXS1357E) cfa
CANINE_2:CFAAFFX.29363.1.S1_S_AT similar to B-cell receptor-associated protein 31 (BCR-associated protein Bap31) (p28 Bap31) (CDM protein) (6C6-AG tumor-associated antigen) (DXS1357E) cfa
DROSOPHILA_2:1626382_S_AT dm
DROSGENOME1:141434_AT dm
HG-U133_PLUS_2:200837_AT B-cell receptor-associated protein 31 hs
HG-U133A:200837_AT B-cell receptor-associated protein 31 hs
HG-U133A_2:200837_AT B-cell receptor-associated protein 31 hs
HG-FOCUS:200837_AT B-cell receptor-associated protein 31 hs
HUGENEFL:X81817_AT B-cell receptor-associated protein 31 hs
U133_X3P:G10047078_3P_AT B-cell receptor-associated protein 31 hs
HG-U95AV2:41724_AT B-cell receptor-associated protein 31 hs
HG-U95D:75139_S_AT B-cell receptor-associated protein 31 hs
HG-U133_PLUS_2:1563472_AT B-cell receptor-associated protein 31 hs
MU11KSUBB:X81816_S_AT B-cell receptor-associated protein 31 mm
MG-U74AV2:93252_AT B-cell receptor-associated protein 31 mm
MOE430A:1451049_AT B-cell receptor-associated protein 31 mm
MOUSE430A_2:1451049_AT B-cell receptor-associated protein 31 mm
MOUSE430_2:1451049_AT B-cell receptor-associated protein 31 mm
MOE430A:1456279_A_AT B-cell receptor-associated protein 31 mm
MOUSE430A_2:1456279_A_AT B-cell receptor-associated protein 31 mm
MOUSE430_2:1456279_A_AT B-cell receptor-associated protein 31 mm
RG-U34B:RC_AA944335_AT similar to B-cell receptor-associated protein 31 rn
RAE230A:1367503_AT similar to B-cell receptor-associated protein 31 rn
RAE230B:1367503_AT similar to B-cell receptor-associated protein 31 rn
RAT230_2:1367503_AT similar to B-cell receptor-associated protein 31 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
6915 apoptosis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5783 endoplasmic reticulum inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF59580 Hypothetical protein Y54G2A.18 [Caenorhabditis elegans] ref|NP_500267.1| Y54G2A.18 [Caenorhabditis elegans] gb|AAG50233.1| 4D656 [Caenorhabditis elegans] 1.0E-109
blast CAE67927 Hypothetical protein CBG13527 [Caenorhabditis briggsae] 4.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR008417 EMBL-EBI B-cell receptor-associated 31-like 8.4E-119
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500267.1 3 5-27,47-64,100-119
Y54G2A.18.2 3 5-27,47-64,100-119
Y54G2A.18.1 3 5-27,47-64,100-119
SNAP00000036498 3 5-27,47-64,100-119
GENEFINDER00000036616 3 5-27,47-64,100-119
Sequence
Target Sequence 
>C. ELEGANS:171831_X_AT
tttgatgaactcggctgacaccaacgaagaagccgccggnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnncaagtccgccaacactgaccgtgacaatttcaagaaccattccga
agggcttccagcgcgagttcgggccgcgttttccgannnnnnncagagattntngccgga
tccaagggtgacaagaagaaggactaattcgattcttcattttcgcgttttgtt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGATGAACTCGGCTGACACCAAC 209 665 39 Antisense
TGAACTCGGCTGACACCAACGAAGA 56 573 44 Antisense
GCTGACACCAACGAAGAAGCCGCCG 567 295 52 Antisense
CCGCCAACACTGACCGTGACAATTT 8 263 119 Antisense
ACACTGACCGTGACAATTTCAAGAA 309 111 125 Antisense
GTGACAATTTCAAGAACCATTCCGA 630 481 134 Antisense
CAAGAACCATTCCGAAGGGCTTCCA 289 183 144 Antisense
AGAACCATTCCGAAGGGCTTCCAGC 84 73 146 Antisense
GCCGGATCCAAGGGTGACAAGAAGA 392 265 213 Antisense
CTAATTCGATTCTTCATTTTCGCGT 56 227 242 Antisense
CGATTCTTCATTTTCGCGTTTTGTT 193 249 248 Antisense
Sequence Source Affymetrix Proprietary Database