[Home] | [Total List]

[171829_x_at] fructose-bisphosphatase

Description CEC528_rc /REP_DB=TREMBL Accession /GB=C07528 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk141e5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 40      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 34      6grp_total > 52      4grp_total > 62      6grp_highest_sub > 03      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3409
1 2 3 4 range
A 4315.7
(3)
P 		2039
(-1.8)
P 		2639.5
(-0.5)
P 		1457.1
(-3)
P 		2859
B 3769.6
(3)
P 		3153.6
(1.4)
P 		3045.1
(1.1)
P 		1486.4
(-3)
P 		2283
C 4698.5
(3)
P 		2990.1
(-0)
P 		2838.3
(-0.3)
P 		1289.3
(-3)
P 		3409
avr 4261.3
(3) 		2727.6
(-0.2) 		2841
(0) 		1410.9
(-3) 		2850

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2226
1 2 3 4 5 6 range
A 1672.2
(-2.5)
P 		3106.5
(2)
P 		3411.1
(3)
P 		2627.6
(0.5)
P 		1501.9
(-3)
P 		1793.4
(-2.1)
P 		1909
B 2547
(-0.8)
P 		2397.7
(-1.2)
P 		3727.9
(3)
P 		2037.7
(-2.4)
P 		2087.5
(-2.2)
P 		1844.5
(-3)
P 		1883
C 2614.7
(-0.4)
P 		2238.5
(-1.9)
P 		3531.4
(3)
P 		2962.5
(0.9)
P 		1935.1
(-3)
P 		2084.8
(-2.4)
P 		1596
avr 2278
(-1.5) 		2580.9
(-0.4) 		3556.8
(3) 		2542.6
(-0.5) 		1841.5
(-3) 		1907.6
(-2.8) 		1715
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1358
1 2 3 4 range
A 1571.3
(3)
P 		442.6
(-2)
P 		690
(-0.9)
P 		213.3
(-3)
P 		1358
B 1202.1
(3)
P 		778.9
(0.1)
P 		705.6
(-0.4)
P 		316.8
(-3)
P 		885
C 1555.3
(3)
P 		859.7
(-0.1)
P 		989.2
(0.5)
P 		217.4
(-3)
P 		1338
avr 1442.9
(3) 		693.7
(-0.8) 		794.9
(-0.3) 		249.2
(-3) 		1194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 797
1 2 3 4 5 6 range
A 308.3
(-3)
P 		1104.8
(3)
P 		742.9
(0.3)
P 		666.4
(-0.3)
P 		453.2
(-1.9)
P 		436.6
(-2)
P 		797
B 886.2
(2.7)
P 		798.1
(1.2)
P 		905.3
(3)
P 		539.7
(-3)
P 		848.1
(2.1)
P 		687.8
(-0.6)
P 		366
C 969.2
(3)
P 		683
(-1.6)
P 		898.8
(1.9)
P 		595.8
(-3)
P 		626.2
(-2.5)
P 		697.9
(-1.4)
P 		373
avr 721.2
(-0.2) 		862
(3) 		849
(2.7) 		600.6
(-3) 		642.5
(-2) 		607.4
(-2.8) 		261
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171829_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27959
Sequence Type Exemplar sequence
Representative Public ID CEC528 NCBI
Target Description CEC528_rc /REP_DB=TREMBL Accession /GB=C07528 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk141e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058603
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K07A3.1.1 ENSEMBL cdna:known chromosome:CEL140:I:2580942:2586125:-1 gene:K07A3.1 A 
NM_058603 NCBI Caenorhabditis elegans K07A3.1 (fructose-bisphosphatase) mRNA, complete cds. A 
K07A3.1.2 ENSEMBL cdna:known chromosome:CEL140:I:2580942:2586127:-1 gene:K07A3.1 A 
SNAP00000015257 ENSEMBL cdna:SNAP chromosome:CEL140:I:2581204:2586123:-1 None
K07A3.1.3 ENSEMBL cdna:known chromosome:CEL140:I:2581016:2586127:-1 gene:K07A3.1 None
GENEFINDER00000015262 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2581204:2586123:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2581117-2582663(-) 85.44 85.44
Public Domain and Genome References
Gene Title fructose-bisphosphatase
Gene Symbol fbp-1
Ensembl K07A3.1
Entrez Gene 266822 Entrez gene
SwissProt Q9N2M2 EMBL-EBI
WormBase CE21023 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260837_AT fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative at
CANINE:1584815_AT similar to fructose-1,6-bisphosphatase 1 cfa
CANINE_2:CFA.17541.1.S1_S_AT similar to fructose-1,6-bisphosphatase 1 cfa
CANINE_2:CFA.6369.1.A1_AT similar to fructose-1,6-bisphosphatase 1 cfa
CANINE_2:CFAAFFX.2850.1.S1_S_AT similar to fructose-1,6-bisphosphatase 1 cfa
DROSOPHILA_2:1641066_S_AT fructose-1,6-bisphosphatase dm
DROSGENOME1:151797_AT fructose-1,6-bisphosphatase dm
CHICKEN:GGA.5139.1.S1_AT fructose-1,6-bisphosphatase 1 gga
HG-U133_PLUS_2:209696_AT fructose-1,6-bisphosphatase 1 hs
HG-U133A:209696_AT fructose-1,6-bisphosphatase 1 hs
HG-FOCUS:209696_AT fructose-1,6-bisphosphatase 1 hs
HG-U133A_2:209696_AT fructose-1,6-bisphosphatase 1 hs
HUGENEFL:U21931_AT fructose-1,6-bisphosphatase 1 hs
U133_X3P:G439225_3P_AT fructose-1,6-bisphosphatase 1 hs
HG-U95AV2:36495_AT fructose-1,6-bisphosphatase 1 hs
MU11KSUBA:AA276043_S_AT fructose bisphosphatase 1 mm
MU11KSUBB:MSA.23975.0_S_AT fructose bisphosphatase 1 mm
MG-U74AV2:96918_AT fructose bisphosphatase 1 mm
MOE430A:1448470_AT fructose bisphosphatase 1 mm
MOUSE430A_2:1448470_AT fructose bisphosphatase 1 mm
MOUSE430_2:1448470_AT fructose bisphosphatase 1 mm
MU11KSUBB:MSA.32472.0_F_AT Fructose bisphosphatase 1, mRNA (cDNA clone MGC:18799 IMAGE:4194764) mm
MU11KSUBB:MSA.6527.0_AT Fructose bisphosphatase 1, mRNA (cDNA clone MGC:18799 IMAGE:4194764) mm
MU19KSUBB:TC30790_AT Fructose bisphosphatase 1, mRNA (cDNA clone MGC:18799 IMAGE:4194764) mm
RG-U34A:M86240_AT fructose-1,6- biphosphatase 1 rn
RAE230A:1368077_AT fructose-1,6- biphosphatase 1 rn
RAT230_2:1368077_AT fructose-1,6- biphosphatase 1 rn
YEAST_2:1776768_AT Fructose-1,6-bisphosphatase, key regulatory enzyme in the gluconeogenesis pathway, required for glucose metabolism Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
42578 phosphoric ester hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39910 Fructose-1,6-biphosphatase protein 1 [Caenorhabditis elegans] ref|NP_491004.1| K07A3.1 [Caenorhabditis elegans] emb|CAB69047.1| fructose-1,6-bisphosphatase [Caenorhabditis elegans] 0.0
blast CAE60538 Hypothetical protein CBG04165 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000146 EMBL-EBI Inositol phosphatase/fructose-1,6-bisphosphatase 1.0E-126
Pfam IPR000146 EMBL-EBI Inositol phosphatase/fructose-1,6-bisphosphatase 8.3E-12
Pfam IPR000146 EMBL-EBI Inositol phosphatase/fructose-1,6-bisphosphatase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:171829_X_AT
gttgaacgagtgtaatccgatggcttatatcattgaacaggccggaggtctcgccacgac
tgggaaagaacgtattgcttgatattcagccaacacagattcaccaacgcgctccaatca
ttctcggatcgaaactcgacgtcgaggaggctctcgaatatcttgccaaatatgataatt
agggtnnnnnaagtcaaannnnnnnattcgagtagtagttcnnnnnaaatgtttacatgt
acatcaccctcatt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGAACGAGTGTAATCCGATGGCT 548 437 13 Antisense
AATCCGATGGCTTATATCATTGAAC 627 167 26 Antisense
ATTGAACAGGCCGGAGGTCTCGCCA 463 3 44 Antisense
GGTCTCGCCACGACTGGGAAAGAAC 395 501 59 Antisense
GTATTGCTTGATATTCAGCCAACAC 18 453 84 Antisense
TCAGCCAACACAGATTCACCAACGC 692 625 98 Antisense
CGCTCCAATCATTCTCGGATCGAAA 545 255 122 Antisense
TTCTCGGATCGAAACTCGACGTCGA 23 691 133 Antisense
AACTCGACGTCGAGGAGGCTCTCGA 487 141 145 Antisense
GGAGGCTCTCGAATATCTTGCCAAA 521 515 158 Antisense
TGTTTACATGTACATCACCCTCATT 193 561 242 Antisense
Sequence Source Affymetrix Proprietary Database