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[171828_x_at]

Description C57435_rc /REP_DB=TREMBL Accession /GB=C57435 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk303e9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 68      6grp_total > 59      4grp_total > 03      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4784
1 2 3 4 range
A 1281.5
(-2.3)
P 		926.6
(-3)
P 		1087.2
(-2.7)
P 		4163.3
(3)
P 		3237
B 1326.1
(-2.2)
P 		1092.1
(-2.5)
P 		691.2
(-3)
P 		5187
(3)
P 		4496
C 1302.1
(-2.5)
P 		1155.9
(-2.7)
P 		897.5
(-3)
P 		5474.8
(3)
P 		4577
avr 1303.2
(-2.4) 		1058.2
(-2.8) 		892
(-3) 		4941.7
(3) 		4050

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3072
1 2 3 4 5 6 range
A 1866.7
(-2.5)
P 		2063.2
(-2)
P 		2078.5
(-1.9)
P 		1661.8
(-3)
P 		1797.8
(-2.6)
P 		3962.4
(3)
P 		2301
B 2896.3
(2.9)
P 		1816.6
(-0.3)
P 		890.5
(-3)
P 		1962.9
(0.2)
P 		1679.6
(-0.7)
P 		2920.5
(3)
P 		2030
C 3531.8
(3)
P 		1747.3
(-1.8)
P 		2099.1
(-0.8)
P 		1282.7
(-3)
P 		2645
(0.6)
P 		2846.2
(1.2)
P 		2249
avr 2764.9
(1.2) 		1875.7
(-2.1) 		1689.4
(-2.8) 		1635.8
(-3) 		2040.8
(-1.5) 		3243
(3) 		1607
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 945
1 2 3 4 range
A 466.6
(0.9)
P 		201.1
(-3)
P 		284.2
(-1.8)
P 		609.4
(3)
P 		408
B 422.9
(-1.3)
P 		269.7
(-2.3)
P 		160.2
(-3)
P 		1105.3
(3)
P 		945
C 431
(-1.8)
P 		332.3
(-2.8)
P 		312.8
(-3)
P 		923.1
(3)
P 		610
avr 440.2
(-1.2) 		267.7
(-2.9) 		252.4
(-3) 		879.3
(3) 		627

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1093
1 2 3 4 5 6 range
A 344.1
(-3)
P 		733.8
(0.8)
P 		452.7
(-2)
P 		421.5
(-2.3)
P 		542.5
(-1.1)
P 		964.7
(3)
P 		621
B 1007.8
(2.4)
P 		604.7
(-0.3)
P 		216.2
(-3)
P 		519.9
(-0.9)
P 		682.4
(0.2)
P 		1089
(3)
P 		873
C 1309.1
(3)
P 		533.2
(-1.4)
P 		534.3
(-1.4)
P 		258
(-3)
P 		855.9
(0.4)
P 		952.8
(1)
P 		1051
avr 887
(1.9) 		623.9
(-0.8) 		401.1
(-3) 		399.8
(-3) 		693.6
(-0.1) 		1002.2
(3) 		602
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171828_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27632
Sequence Type Exemplar sequence
Representative Public ID C57435 NCBI
Target Description C57435_rc /REP_DB=TREMBL Accession /GB=C57435 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk303e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026476
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W01A8.1b.2 ENSEMBL cdna:known chromosome:CEL140:I:7065332:7067459:1 gene:W01A8.1 None
W01A8.1b.3 ENSEMBL cdna:known chromosome:CEL140:I:7065302:7067303:1 gene:W01A8.1 None
W01A8.1b.1 ENSEMBL cdna:known chromosome:CEL140:I:7065332:7067307:1 gene:W01A8.1 None
NM_001026476 NCBI Caenorhabditis elegans MeDiaTor family member (mdt-28) (mdt-28) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7066949-7067178(+) 69.45 69.45
Public Domain and Genome References
Ensembl W01A8.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH19105 Hypothetical protein W01A8.1b [Caenorhabditis elegans] ref|NP_001021647.1| MeDiaTor family member (mdt-28) [Caenorhabditis elegans] 0.0
blast CAA95854 Hypothetical protein W01A8.1a [Caenorhabditis elegans] ref|NP_001021646.1| MeDiaTor family member (mdt-28) [Caenorhabditis elegans] 0.0
blast CAE65688 Hypothetical protein CBG10763 [Caenorhabditis briggsae] 1.0E-159
Sequence
Target Sequence 
>C. ELEGANS:171828_X_AT
acaccagttggacttgacctgttgtantatatcacgtgcgccgctcgttctcgtcatcat
cgttgagaatggttgttgngtggatgtngcntatattttgtcagatgtacgattaccttc
tcaaattatgcacagtaagcagccacntcctcccatttaaaattntcaccagtaccatac
tcctccccacatatttattctatcagccgta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACCAGTTGGACTTGACCTGTTGT 286 109 83 Antisense
CACCAGTTGGACTTGACCTGTTGTA 585 199 84 Antisense
CTCGTTCTCGTCATCATCGTTGAGA 406 233 126 Antisense
GTCATCATCGTTGAGAATGGTTGTT 4 459 135 Antisense
TATTTTGTCAGATGTACGATTACCT 296 663 176 Antisense
GTCAGATGTACGATTACCTTCTCAA 345 467 182 Antisense
GTACGATTACCTTCTCAAATTATGC 375 459 189 Antisense
ATTACCTTCTCAAATTATGCACAGT 85 13 194 Antisense
CAAATTATGCACAGTAAGCAGCCAC 100 195 204 Antisense
TCCTCCCCACATATTTATTCTATCA 649 593 263 Antisense
CCACATATTTATTCTATCAGCCGTA 619 275 269 Antisense
Sequence Source Affymetrix Proprietary Database