[Home] | [Total List]

[171825_at]

Description C57399_rc /REP_DB=TREMBL Accession /GB=C57399 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk303b1 : 3prime end, single read.
Cluster 6grp_total > 63      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.9
(0.5)
A 		10.3
(0.7)
A 		14.3
(3)
A 		3.9
(-3)
A 		10
B 3.3
(-3)
A 		5.1
(-2.3)
A 		9.3
(-0.7)
A 		19
(3)
A 		16
C 6.4
(-2.1)
A 		7.3
(-1.6)
A 		15.9
(3)
A 		4.7
(-3)
A 		11
avr 6.5
(-3) 		7.6
(-2) 		13.2
(3) 		9.2
(-0.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 5.4
(-1.9)
A 		2.4
(-2.8)
A 		20.7
(3)
A 		18
(2.1)
A 		1.9
(-3)
A 		18.5
(2.3)
A 		19
B 4.9
(-2.2)
A 		15.3
(0.2)
A 		27.4
(3)
P 		1.9
(-2.9)
A 		18.7
(1)
A 		1.6
(-3)
A 		26
C 15.9
(0.6)
A 		1.9
(-3)
A 		15.9
(0.6)
A 		25.5
(3)
A 		5.4
(-2.1)
A 		5.6
(-2.1)
A 		24
avr 8.7
(-2.1) 		6.5
(-3) 		21.3
(3) 		15.1
(0.5) 		8.7
(-2.1) 		8.6
(-2.1) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 3.6
(2.8)
A 		2.2
(0.1)
A 		3.7
(3)
A 		0.6
(-3)
A 		3
B 1.1
(-3)
A 		1.3
(-2.6)
A 		2.2
(-0.8)
A 		4.1
(3)
A 		3
C 2.1
(-1.3)
A 		2.1
(-1.3)
A 		5.5
(3)
A 		0.8
(-3)
A 		5
avr 2.3
(-1.5) 		1.9
(-2.7) 		3.8
(3) 		1.8
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1
(-2.4)
A 		0.9
(-2.6)
A 		4.5
(2.9)
A 		4.6
(3)
A 		0.6
(-3)
A 		4.5
(2.9)
A 		4
B 1.7
(-2)
A 		5.1
(0.9)
A 		6.7
(2.2)
P 		0.5
(-3)
A 		7.6
(3)
A 		0.6
(-2.9)
A 		7
C 5.9
(3)
A 		0.6
(-3)
A 		4.1
(1)
A 		5.1
(2.1)
A 		1.7
(-1.8)
A 		1.9
(-1.5)
A 		5
avr 2.9
(-1.6) 		2.2
(-3) 		5.1
(3) 		3.4
(-0.5) 		3.3
(-0.7) 		2.3
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 171825_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27618
Sequence Type Exemplar sequence
Representative Public ID C57399 NCBI
Target Description C57399_rc /REP_DB=TREMBL Accession /GB=C57399 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk303b1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C57399
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C57399 C57399_rc /REP_DB=TREMBL Accession /GB=C57399 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk303b1 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:171825_AT
ggcggtaaatggggtttgcaggaattgcttcgtgggaagganccgttcaaccgttgtgtg
gatggttcaaggagcacaantncctttntnnnnnnnncatttnttcaanaaattaatttt
ggtttaagttaaancctantaaggtttctgggccaatttctattcataatatt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGGTAAATGGGGTTTGCAGGAAT 355 539 45 Antisense
ATGGGGTTTGCAGGAATTGCTTCGT 252 51 53 Antisense
GGGGTTTGCAGGAATTGCTTCGTGG 207 499 55 Antisense
GGTTTGCAGGAATTGCTTCGTGGGA 63 507 57 Antisense
TTGCAGGAATTGCTTCGTGGGAAGG 275 661 60 Antisense
CCGTTCAACCGTTGTGTGGATGGTT 485 255 87 Antisense
TGTGTGGATGGTTCAAGGAGCACAA 320 555 99 Antisense
TAAGGTTTCTGGGCCAATTTCTATT 401 637 184 Antisense
GTTTCTGGGCCAATTTCTATTCATA 103 451 188 Antisense
TTCTGGGCCAATTTCTATTCATAAT 11 695 190 Antisense
TGGGCCAATTTCTATTCATAATATT 702 553 193 Antisense
Sequence Source Affymetrix Proprietary Database