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[171824_x_at] ferritin

Description CEC666_rc /REP_DB=TREMBL Accession /GB=C07666 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk156g7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 65      6grp_total > 72      4grp_total > 57      6grp_highest_sub > 04      6grp_cgc > 84      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 646
1 2 3 4 range
A 909
(-3)
P 		1386.1
(2.1)
P 		1469
(3)
P 		1088.6
(-1.1)
P 		560
B 1031.2
(0.1)
P 		1211.2
(2.7)
P 		1232.5
(3)
P 		822.6
(-3)
P 		410
C 925.2
(-3)
P 		1307.9
(2.1)
P 		1371.9
(3)
P 		944.3
(-2.7)
P 		447
avr 955.1
(-3) 		1301.7
(2.2) 		1357.8
(3) 		951.8
(-3) 		406

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 622
1 2 3 4 5 6 range
A 964.8
(-2.4)
P 		931.1
(-2.7)
P 		1435.7
(3)
P 		1399.3
(2.6)
P 		928.1
(-2.8)
P 		908.9
(-3)
P 		527
B 888.3
(-1.6)
P 		991.4
(0.2)
P 		813.8
(-3)
P 		1106.7
(2.3)
P 		1142.6
(3)
P 		856.1
(-2.2)
P 		329
C 1048.5
(-0.4)
P 		1006.4
(-1)
P 		1304.8
(3)
P 		1046.7
(-0.5)
P 		1284.7
(2.7)
P 		857.1
(-3)
P 		448
avr 967.2
(-1.2) 		976.3
(-1) 		1184.8
(3) 		1184.2
(3) 		1118.5
(1.7) 		874
(-3) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 331
(1.6)
P 		300.9
(0.8)
P 		384
(3)
P 		159.3
(-3)
P 		225
B 328.8
(3)
P 		299.1
(1.8)
P 		285.6
(1.3)
P 		175.3
(-3)
P 		154
C 306.3
(-0.2)
P 		376
(1.1)
P 		478.1
(3)
P 		159.2
(-3)
P 		319
avr 322
(1.3) 		325.3
(1.4) 		382.6
(3) 		164.6
(-3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 177.8
(-3)
P 		331.1
(2.2)
P 		312.7
(1.6)
P 		354.9
(3)
P 		280.1
(0.5)
P 		221.3
(-1.5)
P 		177
B 309.1
(-0.5)
P 		330
(-0)
P 		197.6
(-3)
P 		293.1
(-0.9)
P 		464.2
(3)
P 		319.2
(-0.3)
P 		267
C 388.6
(2.2)
P 		307.1
(-0.2)
P 		332.1
(0.6)
P 		210.5
(-3)
P 		415.7
(3)
P 		286.9
(-0.8)
P 		205
avr 291.8
(-2.1) 		322.7
(-0.5) 		280.8
(-2.7) 		286.2
(-2.4) 		386.7
(3) 		275.8
(-3) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171824_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27797
Sequence Type Exemplar sequence
Representative Public ID CEC666 NCBI
Target Description CEC666_rc /REP_DB=TREMBL Accession /GB=C07666 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk156g7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058797
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000024412 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3680292:3680901:-1 None
D1037.3.2 ENSEMBL cdna:known chromosome:CEL140:I:3679919:3680939:-1 gene:D1037.3 A 
D1037.3.1 ENSEMBL cdna:known chromosome:CEL140:I:3680179:3680946:-1 gene:D1037.3 A 
NM_058797 NCBI Caenorhabditis elegans D1037.3 (ferritin) mRNA, complete cds. A 
SNAP00000024407 ENSEMBL cdna:SNAP chromosome:CEL140:I:3680292:3681876:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3680260-3680610(-) 90.65 90.65
Public Domain and Genome References
Gene Title ferritin
Gene Symbol ftn-2
Ensembl D1037.3
Entrez Gene 171934 Entrez gene
SwissProt Q9TYS3 EMBL-EBI
WormBase CE20622 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18934_G_AT ferritin, putative at
ATGENOME1:18933_AT ferritin, putative at
ATH1-121501:263831_AT ferritin, putative at
CANINE:1584161_X_AT ferritin, heavy polypeptide 1 cfa
CANINE:1584189_X_AT ferritin, heavy polypeptide 1 cfa
CANINE:1587048_X_AT ferritin, heavy polypeptide 1 cfa
CANINE:1585914_X_AT ferritin, heavy polypeptide 1 cfa
CANINE:1582464_AT ferritin, heavy polypeptide 1 cfa
CANINE_2:CFA.12987.1.A1_X_AT ferritin, heavy polypeptide 1 cfa
CANINE_2:CFA.698.1.S1_AT ferritin, heavy polypeptide 1 cfa
CANINE_2:CFAAFFX.7666.1.S1_S_AT ferritin, heavy polypeptide 1 cfa
CANINE:1604964_S_AT Ferritin, heavy polypeptide 1 cfa
CANINE:1606136_AT Ferritin, heavy polypeptide 1 cfa
CANINE_2:CFA.12195.3.A1_AT Ferritin, heavy polypeptide 1 cfa
CANINE_2:CFA.12195.4.A1_AT Ferritin, heavy polypeptide 1 cfa
CANINE_2:CFA.698.5.A1_AT Ferritin, heavy polypeptide 1 cfa
CANINE:1585070_AT Ferritin, heavy polypeptide 1 cfa
CANINE:1594378_X_AT Ferritin, heavy polypeptide 1 cfa
CANINE:1594379_X_AT Ferritin, heavy polypeptide 1 cfa
CANINE:1594384_AT Ferritin, heavy polypeptide 1 cfa
CANINE:1594629_S_AT Ferritin, heavy polypeptide 1 cfa
CANINE:1597156_X_AT Ferritin, heavy polypeptide 1 cfa
CANINE:1583419_AT Ferritin, heavy polypeptide 1 cfa
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6826 iron ion transport inferred from electronic annotation QuickGO AmiGO
6879 iron ion homeostasis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
8199 ferric iron binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21364 Ferritin protein 2 [Caenorhabditis elegans] ref|NP_491198.1| D1037.3 [Caenorhabditis elegans] 2.0E-84
blast AAK21364 Ferritin protein 2 [Caenorhabditis elegans] ref|NP_491198.1| D1037.3 [Caenorhabditis elegans] 3.0E-84
blast CAE66687 Hypothetical protein CBG12026 [Caenorhabditis briggsae] 2.0E-82
blast CAE66687 Hypothetical protein CBG12026 [Caenorhabditis briggsae] 4.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR008331 EMBL-EBI Ferritin and Dps 1.9E-64
Pfam IPR008331 EMBL-EBI Ferritin and Dps 1.9E-64
Sequence
Target Sequence 
>C. ELEGANS:171824_X_AT
gatgagtggggaaccgccctgaagacttttgtagccgcgttggctctcgagaagttcaac
accgagtcgcttctgaagttgcactcgacagccggaaaccacaccgacgcgcatctcact
gactttatcgaggagaaatatttggacgagcaggtctaatctatcaacgaactcgcccgc
atggttgccaacctcaagagagtcggaccaggagttggagagtacctcttcgattaggga
cact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAGTGGGGAACCGCCCTGAAGA 124 407 28 Antisense
GCCCTGAAGACTTTTGTAGCCGCGT 114 285 43 Antisense
AGACTTTTGTAGCCGCGTTGGCTCT 517 71 50 Antisense
TTGGCTCTCGAGAAGTTCAACACCG 434 709 67 Antisense
TTCAACACCGAGTCGCTTCTGAAGT 57 687 82 Antisense
TCTGAAGTTGCACTCGACAGCCGGA 354 609 99 Antisense
CGCGCATCTCACTGACTTTATCGAG 708 255 135 Antisense
GTCTAATCTATCAACGAACTCGCCC 592 469 181 Antisense
GGTTGCCAACCTCAAGAGAGTCGGA 18 507 210 Antisense
GGACCAGGAGTTGGAGAGTACCTCT 490 523 232 Antisense
GAGTACCTCTTCGATTAGGGACACT 121 399 247 Antisense
Sequence Source Affymetrix Proprietary Database