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[171823_x_at]

Description C36477_rc /REP_DB=TREMBL Accession /GB=C36477 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk457g2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 56      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 90      6grp_total > 46      4grp_total > 44      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 164.3
(-0.3)
P 		203.4
(3)
P 		133.3
(-3)
P 		182.8
(1.2)
P 		70
B 171.3
(0.2)
P 		219.4
(3)
P 		173.7
(0.4)
P 		114.9
(-3)
P 		105
C 184
(3)
P 		139.9
(-3)
P 		180.6
(2.5)
P 		174.5
(1.7)
P 		44
avr 173.2
(0.1) 		187.6
(3) 		162.5
(-2) 		157.4
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 140.5
(0)
P 		171.8
(3)
P 		128
(-1.2)
P 		108.8
(-3)
P 		143.1
(0.3)
P 		156.7
(1.6)
P 		63
B 213.6
(3)
P 		148.6
(-0.3)
P 		150.9
(-0.2)
P 		164.4
(0.5)
P 		95.8
(-3)
P 		204.4
(2.5)
P 		118
C 149.7
(0.1)
P 		185
(1.6)
P 		135.8
(-0.6)
P 		98.3
(-2.2)
P 		81.2
(-3)
P 		215.3
(3)
P 		134
avr 167.9
(1.3) 		168.5
(1.3) 		138.2
(-0.8) 		123.8
(-1.8) 		106.7
(-3) 		192.1
(3) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 59.8
(3)
P 		44.2
(0.2)
P 		34.8
(-1.5)
P 		26.8
(-3)
P 		33
B 54.6
(3)
P 		54.2
(2.9)
P 		40.3
(0.1)
P 		24.5
(-3)
P 		30
C 60.9
(2.6)
P 		40.2
(-1.1)
P 		63
(3)
P 		29.4
(-3)
P 		34
avr 58.4
(3) 		46.2
(0.7) 		46
(0.6) 		26.9
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 25.9
(-3)
P 		61.1
(3)
P 		27.9
(-2.7)
P 		27.6
(-2.7)
P 		43.2
(-0.1)
P 		38.1
(-0.9)
P 		35
B 74.3
(2.7)
P 		49.5
(-1)
P 		36.6
(-3)
P 		43.6
(-1.9)
P 		38.9
(-2.7)
P 		76.2
(3)
P 		40
C 55.5
(1.1)
P 		56.4
(1.2)
P 		34.6
(-1.3)
P 		19.8
(-3)
P 		26.3
(-2.3)
P 		72.1
(3)
P 		52
avr 51.9
(1.1) 		55.7
(1.8) 		33
(-2.5) 		30.3
(-3) 		36.1
(-1.9) 		62.1
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171823_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27714
Sequence Type Exemplar sequence
Representative Public ID C36477 NCBI
Target Description C36477_rc /REP_DB=TREMBL Accession /GB=C36477 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk457g2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070740(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070740 NCBI Caenorhabditis elegans W03F9.10 (W03F9.10) mRNA, complete cds. 10/11 A 
GENEFINDER00000001180 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:128065:131375:1 10/11 None
W03F9.10.1 ENSEMBL cdna:known chromosome:CEL140:V:128065:131888:1 gene:W03F9.10 10/11 A 
W03F9.10.2 ENSEMBL cdna:known chromosome:CEL140:V:128065:131567:1 gene:W03F9.10 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001163 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:130510-131379(+) 77.57 77.57
Public Domain and Genome References
Gene Title
Ensembl W03F9.10
Entrez Gene 178542 Entrez gene
SwissProt O16997 EMBL-EBI
WormBase CE14540 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13639_AT proline-rich spliceosome-associated (PSP) family protein at
ATH1-121501:261872_S_AT pliceosome associated protein-related at
CANINE:1591633_AT similar to Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit) cfa
CANINE:1590139_AT similar to Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit) cfa
CANINE:1583619_AT similar to Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit) cfa
CANINE_2:CFA.18141.1.S1_S_AT similar to Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit) cfa
CANINE_2:CFA.3994.1.A1_AT similar to Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit) cfa
CANINE_2:CFA.3994.1.A1_S_AT similar to Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit) cfa
CANINE_2:CFA.6665.1.A1_S_AT similar to Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit) cfa
DROSOPHILA_2:1638857_AT dm
DROSGENOME1:155098_AT dm
HG-U133A:200619_AT splicing factor 3b, subunit 2, 145kDa hs
HG-U133_PLUS_2:200619_AT splicing factor 3b, subunit 2, 145kDa hs
HG-FOCUS:200619_AT splicing factor 3b, subunit 2, 145kDa hs
HG-U133A_2:200619_AT splicing factor 3b, subunit 2, 145kDa hs
HUGENEFL:U41371_AT splicing factor 3b, subunit 2, 145kDa hs
U133_X3P:G5803154_3P_S_AT splicing factor 3b, subunit 2, 145kDa hs
U133_X3P:G5803154_3P_AT splicing factor 3b, subunit 2, 145kDa hs
U133_X3P:200619_3P_AT splicing factor 3b, subunit 2, 145kDa hs
HG-U133_PLUS_2:1558230_AT splicing factor 3b, subunit 2, 145kDa hs
HG-U95AV2:36973_AT splicing factor 3b, subunit 2, 145kDa hs
HG-U95C:61007_AT Splicing factor 3b, subunit 2, 145kDa hs
MOUSE430A_2:1438637_X_AT splicing factor 3b, subunit 2 mm
MOUSE430_2:1438637_X_AT splicing factor 3b, subunit 2 mm
MOE430A:1438637_X_AT splicing factor 3b, subunit 2 mm
MOUSE430_2:1459836_X_AT splicing factor 3b, subunit 2 mm
MOE430B:1459836_X_AT splicing factor 3b, subunit 2 mm
MU11KSUBA:AA268913_F_AT splicing factor 3b, subunit 2 mm
MG-U74BV2:164772_F_AT splicing factor 3b, subunit 2 mm
MG-U74CV2:170741_AT splicing factor 3b, subunit 2 mm
MG-U74CV2:169840_I_AT splicing factor 3b, subunit 2 mm
MOE430A:1433461_AT splicing factor 3b, subunit 2 mm
MOUSE430A_2:1433461_AT splicing factor 3b, subunit 2 mm
MOUSE430_2:1433461_AT splicing factor 3b, subunit 2 mm
MOE430A:1456352_A_AT splicing factor 3b, subunit 2 mm
MOUSE430A_2:1456352_A_AT splicing factor 3b, subunit 2 mm
MOUSE430_2:1456352_A_AT splicing factor 3b, subunit 2 mm
MOE430A:1456040_AT splicing factor 3b, subunit 2 mm
MOUSE430A_2:1456040_AT splicing factor 3b, subunit 2 mm
MOUSE430_2:1456040_AT splicing factor 3b, subunit 2 mm
MOE430B:1429362_A_AT splicing factor 3b, subunit 2 mm
MOUSE430_2:1429362_A_AT splicing factor 3b, subunit 2 mm
MOE430B:1453123_AT splicing factor 3b, subunit 2 mm
MOUSE430_2:1453123_AT splicing factor 3b, subunit 2 mm
MU19KSUBA:TC14259_AT Splicing factor 3b, subunit 2 (Sf3b2), mRNA mm
MU19KSUBB:TC32558_AT Splicing factor 3b, subunit 2 (Sf3b2), mRNA mm
RG-U34C:RC_AI178806_AT splicing factor 3b, subunit 2 (predicted) rn
RAE230A:1377070_AT splicing factor 3b, subunit 2 (predicted) rn
RAT230_2:1377070_AT splicing factor 3b, subunit 2 (predicted) rn
RAE230A:1388614_AT splicing factor 3b, subunit 2 (predicted) rn
RAT230_2:1388614_AT splicing factor 3b, subunit 2 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6397 mRNA processing inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503141 W03F9.10 [Caenorhabditis elegans] gb|AAG24205.1| Hypothetical protein W03F9.10 [Caenorhabditis elegans] 0.0
blast CAE62369 Hypothetical protein CBG06453 [Caenorhabditis briggsae] 0.0
blast EAA10768 ENSANGP00000020597 [Anopheles gambiae str. PEST] ref|XP_316308.2| ENSANGP00000020597 [Anopheles gambiae str. PEST] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR006568 EMBL-EBI PSP, proline-rich 1.5E-25
Pfam IPR007180 EMBL-EBI Protein of unknown function DUF382 1.3E-94
Sequence
Target Sequence 
>C. ELEGANS:171823_X_AT
atatggatgagcaaggactggcggctcggtacgaggagcagctccgaaagcaaaagcatc
ggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcacgctgcca
aacagaatagaaaacgcaaagttcaagatgaccagnaggaccagacgtcatcatcctcgt
cgtcaggatccagtggcaagaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATGGATGAGCAAGGACTGGCGGC 379 17 37 Antisense
TGAGCAAGGACTGGCGGCTCGGTAC 261 569 44 Antisense
GACTGGCGGCTCGGTACGAGGAGCA 473 375 52 Antisense
TGGCGGCTCGGTACGAGGAGCAGCT 315 545 55 Antisense
GCTCGGTACGAGGAGCAGCTCCGAA 626 295 60 Antisense
GAGCAGCTCCGAAAGCAAAAGCATC 650 389 72 Antisense
GCACGCTGCCAAACAGAATAGAAAA 657 315 146 Antisense
GAAAACGCAAAGTTCAAGATGACCA 26 355 166 Antisense
ATCATCCTCGTCGTCAGGATCCAGT 546 29 206 Antisense
CTCGTCGTCAGGATCCAGTGGCAAG 700 231 212 Antisense
CGTCGTCAGGATCCAGTGGCAAGAA 297 245 214 Antisense
Sequence Source Affymetrix Proprietary Database