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[171822_x_at] glyceraldehyde 3-phosphate dehydrogenase 4 /// glyceraldehyde 3-phosphate dehydrogenase 1

Description CEC193_rc /REP_DB=TREMBL Accession /GB=C08193 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk184a5 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 98      6grp_total > 98      4grp_total > 24      6grp_cgc > 79      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 653
1 2 3 4 range
A 439.1
(-3)
A 		618.2
(-0.6)
P 		676.4
(0.1)
P 		895.2
(3)
A 		456
B 242.4
(-3)
A 		521.5
(0.3)
A 		602.9
(1.3)
A 		743.1
(3)
A 		501
C 244
(-3)
A 		494.3
(0.8)
A 		548.5
(1.6)
A 		639.5
(3)
A 		396
avr 308.5
(-3) 		544.7
(0.1) 		609.3
(1) 		759.3
(3) 		451

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4655
1 2 3 4 5 6 range
A 577.6
(-3)
P 		641.6
(-2.9)
P 		690.4
(-2.9)
P 		959.8
(-2.5)
P 		4485.5
(2.1)
P 		5210
(3)
P 		4632
B 555
(-3)
A 		620.1
(-2.9)
P 		788.7
(-2.7)
P 		928.9
(-2.5)
P 		4400.6
(2.3)
P 		4871
(3)
P 		4316
C 575
(-3)
P 		653.2
(-2.9)
P 		860
(-2.6)
P 		1137.8
(-2.1)
P 		4081
(2.4)
P 		4483.9
(3)
P 		3909
avr 569.2
(-3) 		638.3
(-2.9) 		779.7
(-2.7) 		1008.8
(-2.4) 		4322.4
(2.3) 		4855
(3) 		4286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 159.9
(0.8)
A 		134.2
(-2.6)
P 		176.8
(3)
P 		131
(-3)
A 		46
B 77.3
(-3)
A 		128.8
(0.8)
A 		139.7
(1.6)
A 		158.3
(3)
A 		81
C 80.8
(-3)
A 		142.1
(0.3)
A 		191.2
(3)
A 		107.8
(-1.5)
A 		110
avr 106
(-3) 		135
(-0.2) 		169.2
(3) 		132.4
(-0.5) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1710
1 2 3 4 5 6 range
A 106.5
(-3)
P 		228.2
(-2.4)
P 		150.4
(-2.8)
P 		243.4
(-2.3)
P 		1353.5
(3)
P 		1268.5
(2.6)
P 		1247
B 193.1
(-3)
A 		206.4
(-2.9)
P 		191.5
(-3)
P 		246
(-2.8)
P 		1787.9
(2.9)
P 		1816.4
(3)
P 		1625
C 213.1
(-2.9)
P 		199.3
(-3)
P 		218.9
(-2.9)
P 		228.8
(-2.9)
P 		1320.6
(2.2)
P 		1501
(3)
P 		1302
avr 170.9
(-3) 		211.3
(-2.8) 		186.9
(-2.9) 		239.4
(-2.7) 		1487.3
(2.8) 		1528.6
(3) 		1358
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171822_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27999
Sequence Type Exemplar sequence
Representative Public ID CEC193 NCBI
Target Description CEC193_rc /REP_DB=TREMBL Accession /GB=C08193 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk184a5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063836, NM_063791
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T09F3.3.2 ENSEMBL cdna:known chromosome:CEL140:II:10393671:10395241:1 gene:T09F3.3 A 
GENEFINDER00000027294 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10171191:10172316:1 None
NM_063791 NCBI Caenorhabditis elegans GPD (glyceraldehyde 3-phosphate dehydrogenase) family member (gpd-4) (gpd-4) mRNA, complete cds. A 
T09F3.3.1 ENSEMBL cdna:known chromosome:CEL140:II:10394024:10395241:1 gene:T09F3.3 A 
T09F3.3.3 ENSEMBL cdna:known chromosome:CEL140:II:10394039:10395241:1 gene:T09F3.3 None
NM_063836 NCBI Caenorhabditis elegans GPD (glyceraldehyde 3-phosphate dehydrogenase) family member (gpd-1) (gpd-1) mRNA, complete cds. A 
F33H1.2 ENSEMBL cdna:known chromosome:CEL140:II:10171181:10172350:1 gene:F33H1.2 A 
SNAP00000009658 ENSEMBL cdna:SNAP chromosome:CEL140:II:10394047:10395172:1 None
SNAP00000027288 ENSEMBL cdna:SNAP chromosome:CEL140:II:10171191:10172316:1 None
GENEFINDER00000009664 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10394047:10395172:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10171969-10172322(+) 96.09 96.09
Public Domain and Genome References
Gene Title glyceraldehyde 3-phosphate dehydrogenase 4
glyceraldehyde 3-phosphate dehydrogenase 1
Gene Symbol gpd-4
gpd-1
Ensembl F33H1.2
T09F3.3
Entrez Gene 174578 Entrez gene
174603 Entrez gene
SwissProt P17331 EMBL-EBI
P04970 EMBL-EBI
WormBase CE01568 Wormbase
CE02343 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262939_S_AT glyceraldehyde 3-phosphate dehydrogenase, cytosolic, putative / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase, putative at
ATGENOME1:17463_AT glyceraldehyde 3-phosphate dehydrogenase, cytosolic, putative / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase, putative at
ATH1-121501:262939_S_AT glyceraldehyde 3-phosphate dehydrogenase, cytosolic, putative / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase, putative at
ATGENOME1:17463_AT glyceraldehyde 3-phosphate dehydrogenase, cytosolic, putative / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase, putative at
CANINE_2:CFA.16332.1.S1_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.11198.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.12458.1.S1_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.12458.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.13010.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.15326.1.S1_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.15326.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.22564.1.S1_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.23015.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.26731.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.30894.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.5711.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.8103.1.S1_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFA.16332.1.S1_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.11198.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.12458.1.S1_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.12458.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.13010.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.15326.1.S1_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.15326.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.22564.1.S1_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.23015.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.26731.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.30894.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.5711.1.S1_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
CANINE_2:CFAAFFX.8103.1.S1_AT similar to glyceraldehyde-3-phosphate dehydrogenase cfa
MOUSE430A_2:1447999_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MOE430A:1447999_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MOUSE430_2:1447999_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MU11KSUBB:MSA.677.0_F_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MG-U74AV2:101214_F_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MG-U74CV2:137249_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MG-U74AV2:162176_R_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MOE430A:1418625_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MOUSE430A_2:1418625_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MOUSE430_2:1418625_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MOUSE430A_2:1447999_X_AT glyceraldehyde-3-phosphate dehydrogenase mm
MOE430A:1447999_X_AT glyceraldehyde-3-phosphate dehydrogenase mm
MOUSE430_2:1447999_X_AT glyceraldehyde-3-phosphate dehydrogenase mm
MU11KSUBB:MSA.677.0_F_AT glyceraldehyde-3-phosphate dehydrogenase mm
MG-U74AV2:101214_F_AT glyceraldehyde-3-phosphate dehydrogenase mm
MG-U74CV2:137249_AT glyceraldehyde-3-phosphate dehydrogenase mm
MG-U74AV2:162176_R_AT glyceraldehyde-3-phosphate dehydrogenase mm
MOE430A:1418625_S_AT glyceraldehyde-3-phosphate dehydrogenase mm
MOUSE430A_2:1418625_S_AT glyceraldehyde-3-phosphate dehydrogenase mm
MOUSE430_2:1418625_S_AT glyceraldehyde-3-phosphate dehydrogenase mm
MOUSE430A_2:1447999_X_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MOE430A:1447999_X_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MOUSE430_2:1447999_X_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MU11KSUBB:MSA.677.0_F_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MG-U74AV2:101214_F_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MG-U74CV2:137249_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MG-U74AV2:162176_R_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MG-U74CV2:169710_I_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MOE430A:1418625_S_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MOUSE430A_2:1418625_S_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MOUSE430_2:1418625_S_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MU19KSUBC:TC35630_F_AT Glyceraldehyde-3-phosphate dehydrogenase, mRNA (cDNA clone MGC:106375 IMAGE:2649847) mm
MU19KSUBC:TC35630_I_AT Glyceraldehyde-3-phosphate dehydrogenase, mRNA (cDNA clone MGC:106375 IMAGE:2649847) mm
MOUSE430A_2:1447999_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MOE430A:1447999_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MOUSE430_2:1447999_X_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MU11KSUBB:MSA.677.0_F_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MG-U74AV2:101214_F_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MG-U74CV2:137249_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MG-U74AV2:162176_R_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MOE430A:1418625_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MOUSE430A_2:1418625_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MOUSE430_2:1418625_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase mm
MOUSE430A_2:1447999_X_AT glyceraldehyde-3-phosphate dehydrogenase mm
MOE430A:1447999_X_AT glyceraldehyde-3-phosphate dehydrogenase mm
MOUSE430_2:1447999_X_AT glyceraldehyde-3-phosphate dehydrogenase mm
MU11KSUBB:MSA.677.0_F_AT glyceraldehyde-3-phosphate dehydrogenase mm
MG-U74AV2:101214_F_AT glyceraldehyde-3-phosphate dehydrogenase mm
MG-U74CV2:137249_AT glyceraldehyde-3-phosphate dehydrogenase mm
MG-U74AV2:162176_R_AT glyceraldehyde-3-phosphate dehydrogenase mm
MOE430A:1418625_S_AT glyceraldehyde-3-phosphate dehydrogenase mm
MOUSE430A_2:1418625_S_AT glyceraldehyde-3-phosphate dehydrogenase mm
MOUSE430_2:1418625_S_AT glyceraldehyde-3-phosphate dehydrogenase mm
MOUSE430A_2:1447999_X_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MOE430A:1447999_X_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MOUSE430_2:1447999_X_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MU11KSUBB:MSA.677.0_F_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MG-U74AV2:101214_F_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MG-U74CV2:137249_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MG-U74AV2:162176_R_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MG-U74CV2:169710_I_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MOE430A:1418625_S_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MOUSE430A_2:1418625_S_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MOUSE430_2:1418625_S_AT similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mm
MU19KSUBC:TC35630_F_AT Glyceraldehyde-3-phosphate dehydrogenase, mRNA (cDNA clone MGC:106375 IMAGE:2649847) mm
MU19KSUBC:TC35630_I_AT Glyceraldehyde-3-phosphate dehydrogenase, mRNA (cDNA clone MGC:106375 IMAGE:2649847) mm
RT-U34:M17701_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase rn
RG-U34A:M17701_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase rn
RAE230A:1367557_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase rn
RAT230_2:1367557_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase rn
RT-U34:M17701_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase rn
RG-U34A:M17701_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase rn
RAE230A:1367557_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase rn
RAT230_2:1367557_S_AT similar to glyceraldehyde-3-phosphate dehydrogenase rn
YEAST_2:1775388_AT Glyceraldehyde-3-phosphate dehydrogenase, isozyme 1, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall Sc
YEAST_2:1775388_AT Glyceraldehyde-3-phosphate dehydrogenase, isozyme 1, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6006 glucose metabolism inferred from electronic annotation QuickGO AmiGO
6096 glycolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4365 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity inferred from electronic annotation QuickGO AmiGO
8943 glyceraldehyde-3-phosphate dehydrogenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88697 Hypothetical protein F33H1.2 [Caenorhabditis elegans] emb|CAA36899.1| gpd-4 [Caenorhabditis elegans] ref|NP_496192.1| GPD (glyceraldehyde 3-phosphate dehydrogenase) family member (gpd-4) [Caenorhabditis elegans] sp|P17331|G3P4_CAEEL Glyceraldehyde-3-phosphate dehydrogenase 4 (GAPDH-4) 0.0
blast CAA88870 Hypothetical protein T09F3.3 [Caenorhabditis elegans] emb|CAA36900.1| gpd-1 [Caenorhabditis elegans] emb|CAA28504.1| glyceraldehyde-3-phosphate dehydrogenase [Caenorhabditis elegans] ref|NP_496237.1| GPD (glyceraldehyde 3-phosphate dehydrogenase) family member (gpd-1) [Caenorhabditis elegans] sp|P04970|G3P1_CAEEL Glyceraldehyde-3-phosphate dehydrogenase 1 (GAPDH-1) 0.0
blast CAE58358 Hypothetical protein CBG01479 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000173 EMBL-EBI Glyceraldehyde 3-phosphate dehydrogenase 4.6E-122
Pfam IPR000173 EMBL-EBI Glyceraldehyde 3-phosphate dehydrogenase 1.0E-126
Pfam IPR000173 EMBL-EBI Glyceraldehyde 3-phosphate dehydrogenase 9.6E-121
Sequence
Target Sequence 
>C. ELEGANS:171822_X_AT
tccgtcgttgatatgaccgttcgcctcgagaaaccagcttcgatggatgacatcaagaag
gtagtcaaggccgctgccgatggaccaatgaagggaatcctcgcctacaccgaagatcaa
gttgtgtcgactgacttcgtgtccgaccctcactcgtccattttcgatactggagcatgc
atttcgctcaacccgaacttcgtcaagctcgtctcttggcacgacaatgaatatggcttc
tcgcgccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGTCGTTGATATGACCGTTCGCC 420 591 21 Antisense
TTCGCCTCGAGAAACCAGCTTCGAT 595 695 40 Antisense
CAAGAAGGTAGTCAAGGCCGCTGCC 411 151 74 Antisense
GCCGCTGCCGATGGACCAATGAAGG 481 285 90 Antisense
CAATGAAGGGAATCCTCGCCTACAC 327 183 106 Antisense
TCCTCGCCTACACCGAAGATCAAGT 67 593 118 Antisense
TGTGTCGACTGACTTCGTGTCCGAC 385 555 143 Antisense
CTGGAGCATGCATTTCGCTCAACCC 120 241 190 Antisense
TCAACCCGAACTTCGTCAAGCTCGT 593 631 208 Antisense
GCTCGTCTCTTGGCACGACAATGAA 605 299 227 Antisense
CAATGAATATGGCTTCTCGCGCCGG 104 183 245 Antisense
Sequence Source Affymetrix Proprietary Database