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[171821_x_at]

Description C36129_rc /REP_DB=TREMBL Accession /GB=C36129 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk455a1 : 3prime end, single read.
Cluster 6grp_total > 07      4grp_total > 15      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 59
(1.1)
A 		36.1
(-3)
A 		69.7
(3)
A 		56.7
(0.7)
A 		34
B 60.6
(-0.2)
A 		53.1
(-0.8)
A 		26.2
(-3)
P 		100.5
(3)
A 		74
C 79.1
(2.7)
A 		78.6
(2.7)
A 		81.1
(3)
P 		34.7
(-3)
A 		46
avr 66.2
(3) 		55.9
(-3) 		59
(-1.2) 		64
(1.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 97.3
(3)
P 		47.5
(-1.7)
A 		85.9
(1.9)
P 		33.4
(-3)
A 		56.1
(-0.9)
A 		40
(-2.4)
A 		64
B 80.9
(1.2)
A 		98.1
(3)
A 		42
(-3)
A 		84.2
(1.5)
A 		48.3
(-2.3)
A 		86.9
(1.8)
P 		56
C 105.5
(3)
P 		93.3
(1.7)
P 		48.2
(-3)
A 		102.2
(2.7)
A 		57.7
(-2)
A 		70.2
(-0.7)
A 		57
avr 94.6
(3) 		79.6
(0.8) 		58.7
(-2.3) 		73.3
(-0.1) 		54
(-3) 		65.7
(-1.3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 21.5
(3)
A 		7.8
(-3)
A 		18.2
(1.6)
A 		8.3
(-2.8)
A 		14
B 19.3
(2.2)
A 		13.1
(-0.3)
A 		6.1
(-3)
P 		21.4
(3)
A 		15
C 26.2
(2.4)
A 		22.6
(1.5)
A 		28.3
(3)
P 		5.9
(-3)
A 		22
avr 22.3
(3) 		14.5
(-1.5) 		17.5
(0.2) 		11.9
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 17.9
(2.5)
P 		16.9
(1.9)
A 		18.7
(3)
P 		8.5
(-3)
A 		16.9
(1.9)
A 		9.7
(-2.3)
A 		10
B 28.1
(1.8)
A 		32.7
(3)
A 		10.2
(-3)
A 		22.3
(0.2)
A 		19.6
(-0.5)
A 		32.4
(2.9)
P 		23
C 39.1
(3)
P 		28.5
(0.6)
P 		12.3
(-3)
A 		20.6
(-1.1)
A 		18.7
(-1.6)
A 		23.5
(-0.5)
A 		27
avr 28.4
(3) 		26
(2) 		13.7
(-3) 		17.1
(-1.6) 		18.4
(-1.1) 		21.9
(0.3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171821_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27616
Sequence Type Exemplar sequence
Representative Public ID C36129 NCBI
Target Description C36129_rc /REP_DB=TREMBL Accession /GB=C36129 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk455a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171799
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
E02H4.3a ENSEMBL cdna:known chromosome:CEL140:X:14284755:14291229:-1 gene:E02H4.3 A 
NM_171799 NCBI Caenorhabditis elegans E02H4.3a (E02H4.3) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14284883-14285167(-) 74.38 74.38
Public Domain and Genome References
Ensembl E02H4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94122 Hypothetical protein E02H4.3a [Caenorhabditis elegans] emb|CAA91979.2| Hypothetical protein E02H4.3a [Caenorhabditis elegans] ref|NP_741928.1| E02H4.3a [Caenorhabditis elegans] 0.0
blast CAE63011 Hypothetical protein CBG07253 [Caenorhabditis briggsae] 0.0
blast CAD44096 Hypothetical protein E02H4.3b [Caenorhabditis elegans] emb|CAD44105.1| Hypothetical protein E02H4.3b [Caenorhabditis elegans] ref|NP_741927.1| E02H4.3b [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 8.0E-54
hanks 3.1.5 CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk6 2.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 5.8E-59
Sequence
Target Sequence 
>C. ELEGANS:171821_X_AT
atcagcaaattgactctccaaccttgtcatcgattccgggccctgcacttttgtcgatgg
ccaaattctgtatgtcctctcacctattcgggtacattgccagacttgaaatctggaaaa
tcttcccacaannnnnnctctggcccctccctggcattttccccattaagganatcangt
gaggttctttgcccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaatttctcacg
caacaatatgagaagtaaggtaggagtattgatanttaataagtgtaatcaaaagtagat
gcagtgatgtgagttgt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAGCAAATTGACTCTCCAACCTT 234 29 14 Antisense
AAATTGACTCTCCAACCTTGTCATC 416 115 20 Antisense
GGCCCTGCACTTTTGTCGATGGCCA 686 541 52 Antisense
CCTGCACTTTTGTCGATGGCCAAAT 34 267 55 Antisense
GATGGCCAAATTCTGTATGTCCTCT 226 407 69 Antisense
TGGCCAAATTCTGTATGTCCTCTCA 150 545 71 Antisense
TCCTCTCACCTATTCGGGTACATTG 194 591 88 Antisense
TATTCGGGTACATTGCCAGACTTGA 43 663 98 Antisense
TGAAATCTGGAAAATCTTCCCACAA 192 573 120 Antisense
TTAATTTCTCACGCAACAATATGAG 358 683 241 Antisense
AAGTAGATGCAGTGATGTGAGTTGT 576 155 306 Antisense
Sequence Source Affymetrix Proprietary Database