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[171820_x_at] Fructose-bisphosphate aldolase class-I

Description C57683_rc /REP_DB=TREMBL Accession /GB=C57683 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk309e3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 31      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 24      6grp_total > 43      4grp_total > 53      6grp_high1_sub > 03      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4905
1 2 3 4 range
A 5964.7
(3)
P 		4499.5
(1.2)
P 		3559.2
(0)
P 		1141
(-3)
P 		4824
B 5240.4
(3)
P 		4763.2
(2.3)
P 		2889.4
(-0.5)
P 		1174.9
(-3)
P 		4066
C 5515.4
(3)
P 		4706.2
(1.9)
P 		3793.7
(0.7)
P 		1059.6
(-3)
P 		4456
avr 5573.5
(3) 		4656.3
(1.8) 		3414.1
(0.1) 		1125.2
(-3) 		4448

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5119
1 2 3 4 5 6 range
A 2312.6
(-1.4)
P 		2565.9
(-0.8)
P 		4485.3
(3)
P 		2401.6
(-1.2)
P 		2372.3
(-1.2)
P 		1493.1
(-3)
P 		2992
B 4568.3
(0.3)
P 		3978.9
(-0.5)
P 		6612.4
(3)
P 		2743.5
(-2.2)
P 		2590.6
(-2.4)
P 		2118.3
(-3)
P 		4494
C 4024.4
(3)
P 		3657.9
(1.8)
P 		3051.1
(-0.1)
P 		2199.4
(-2.9)
P 		2155.4
(-3)
P 		2437.6
(-2.1)
P 		1869
avr 3635.1
(0.6) 		3400.9
(0.1) 		4716.3
(3) 		2448.2
(-2) 		2372.8
(-2.2) 		2016.3
(-3) 		2700
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2005
1 2 3 4 range
A 2171.7
(3)
P 		976.7
(-0.6)
P 		930.4
(-0.7)
P 		167
(-3)
P 		2005
B 1671.1
(3)
P 		1176.4
(0.9)
P 		669.5
(-1.2)
P 		250.4
(-3)
P 		1421
C 1825.8
(3)
P 		1353.1
(1.3)
P 		1322.2
(1.2)
P 		178.7
(-3)
P 		1647
avr 1889.5
(3) 		1168.7
(0.4) 		974
(-0.2) 		198.7
(-3) 		1691

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1242
1 2 3 4 5 6 range
A 426.3
(-2.4)
P 		912.5
(2.4)
P 		976.8
(3)
P 		609.1
(-0.6)
P 		715.9
(0.4)
P 		363.5
(-3)
P 		613
B 1589.5
(2.9)
P 		1324.4
(1.1)
P 		1605.7
(3)
P 		726.7
(-3)
P 		1052.5
(-0.8)
P 		789.9
(-2.6)
P 		879
C 1491.7
(3)
P 		1116.1
(0.9)
P 		776.6
(-1.1)
P 		442.3
(-3)
P 		697.5
(-1.5)
P 		816
(-0.9)
P 		1049
avr 1169.2
(3) 		1117.7
(2.5) 		1119.7
(2.5) 		592.7
(-3) 		822
(-0.6) 		656.5
(-2.3) 		577
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171820_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27861
Sequence Type Exemplar sequence
Representative Public ID C57683 NCBI
Target Description C57683_rc /REP_DB=TREMBL Accession /GB=C57683 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk309e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171235
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000043731 ENSEMBL cdna:SNAP chromosome:CEL140:III:13562999:13564435:-1 None
GENEFINDER00000043737 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13562999:13564435:-1 None
NM_171235 NCBI Caenorhabditis elegans T05D4.1 (T05D4.1) mRNA, complete cds. A 
T05D4.1.1 ENSEMBL cdna:known chromosome:CEL140:III:13562857:13564506:-1 gene:T05D4.1 A 
T05D4.1.2 ENSEMBL cdna:known chromosome:CEL140:III:13562862:13564540:-1 gene:T05D4.1 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13562921-13563222(-) 67.1 67.1
Public Domain and Genome References
Gene Title Fructose-bisphosphate aldolase class-I
Ensembl T05D4.1
Entrez Gene 176788 Entrez gene
SwissProt P54216 EMBL-EBI
WormBase CE16341 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250917_AT fructose-bisphosphate aldolase, putative at
CANINE:1597859_AT similar to Fructose-bisphosphate aldolase A (Muscle-type aldolase) (Lung cancer antigen NY-LU-1) cfa
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6096 glycolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4332 fructose-bisphosphate aldolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03291 Hypothetical protein T05D4.1 [Caenorhabditis elegans] ref|NP_741281.1| T05D4.1 [Caenorhabditis elegans] 0.0
blast P54216 Fructose-bisphosphate aldolase 1 (Aldolase CE-1) (CE1) dbj|BAA12091.1| aldolase Ce1 [Caenorhabditis elegans] 0.0
blast CAE69264 Hypothetical protein CBG15316 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000741 EMBL-EBI Fructose-bisphosphate aldolase, class-I 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:171820_X_AT
gaaagaagccatggccctcacattctcctatggacgtgctcttcaagcctcctgtctcgc
caagtgggccggaaaggacgagaacatcgcagccgcccaagaagtcctgctccatcgtgc
tcaggtcaactcccttgcctctgtcggaaaatacaccggggatgcttcagcttttgcatt
ccgctttncnaagcctcnttcgtcgccgatctttcttattacatggccggtatacgctca

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGAAGCCATGGCCCTCACATTC 50 361 20 Antisense
CTCACATTCTCCTATGGACGTGCTC 643 227 36 Antisense
TCCTATGGACGTGCTCTTCAAGCCT 632 591 45 Antisense
CTGTCTCGCCAAGTGGGCCGGAAAG 697 237 71 Antisense
CGCCAAGTGGGCCGGAAAGGACGAG 408 255 77 Antisense
AAAGGACGAGAACATCGCAGCCGCC 470 121 92 Antisense
CCCTTGCCTCTGTCGGAAAATACAC 337 259 151 Antisense
AATACACCGGGGATGCTTCAGCTTT 401 169 169 Antisense
CGGGGATGCTTCAGCTTTTGCATTC 671 241 176 Antisense
CGATCTTTCTTATTACATGGCCGGT 33 249 226 Antisense
TTATTACATGGCCGGTATACGCTCA 261 677 235 Antisense
Sequence Source Affymetrix Proprietary Database