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[171819_x_at] actin /// ---

Description C57585_rc /REP_DB=TREMBL Accession /GB=C57585 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk306b1 : 3prime end, single read.
Cluster 6grp_total > 44      4grp_total > 26      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 29.2
(-2.3)
A 		29.9
(-2.2)
A 		24.9
(-3)
A 		62.6
(3)
A 		38
B 24.6
(-3)
A 		52
(3)
A 		42.3
(0.9)
A 		33.4
(-1.1)
A 		27
C 29.6
(-2.4)
A 		46.4
(1.1)
A 		26.7
(-3)
A 		55.4
(3)
A 		29
avr 27.8
(-3) 		42.8
(1) 		31.3
(-2.1) 		50.5
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 35.9
(0.6)
A 		53.3
(2.8)
A 		55.2
(3)
P 		17.7
(-1.6)
A 		6.5
(-3)
A 		36
(0.6)
A 		49
B 20.7
(0)
A 		12.8
(-3)
A 		28.5
(3)
M 		21.6
(0.4)
A 		26.6
(2.3)
A 		27.6
(2.7)
A 		16
C 41.4
(0.7)
A 		37.6
(-0.1)
A 		51.8
(3)
M 		29.8
(-1.8)
A 		28.9
(-2)
A 		24.1
(-3)
A 		28
avr 32.7
(-0.1) 		34.6
(0.4) 		45.2
(3) 		23
(-2.4) 		20.7
(-3) 		29.2
(-0.9) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 10.6
(3)
A 		6.5
(-3)
A 		6.5
(-3)
A 		9.2
(1)
A 		4
B 7.8
(-2.3)
A 		12.8
(3)
A 		9.8
(-0.2)
A 		7.1
(-3)
A 		6
C 9.8
(-2.3)
A 		13.3
(3)
A 		9.3
(-3)
A 		9.3
(-3)
A 		4
avr 9.4
(-0.8) 		10.9
(3) 		8.5
(-3) 		8.5
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 6.6
(-1.4)
A 		18.9
(3)
A 		12
(0.6)
P 		4.5
(-2.1)
A 		2
(-3)
A 		8.8
(-0.6)
A 		17
B 7.2
(-0.3)
A 		4.3
(-3)
A 		6.9
(-0.6)
M 		5.7
(-1.7)
A 		10.8
(3)
A 		10.3
(2.5)
A 		7
C 15.3
(3)
A 		11.5
(0.5)
A 		13.2
(1.6)
M 		6
(-3)
A 		9.4
(-0.8)
A 		8.1
(-1.6)
A 		9
avr 9.7
(1.2) 		11.6
(3) 		10.7
(2.1) 		5.4
(-3) 		7.4
(-1.1) 		9.1
(0.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171819_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27617
Sequence Type Exemplar sequence
Representative Public ID C57585 NCBI
Target Description C57585_rc /REP_DB=TREMBL Accession /GB=C57585 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk306b1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026763, NM_063280
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000039316 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8034400:8035688:-1 None
C08B11.5.1 ENSEMBL cdna:known chromosome:CEL140:II:8033912:8035688:-1 gene:C08B11.5 A 
C08B11.5.2 ENSEMBL cdna:known chromosome:CEL140:II:8033954:8035688:-1 gene:C08B11.5 A 
NM_063280 NCBI Caenorhabditis elegans C08B11.6 (actin) mRNA, complete cds. A 
SNAP00000039306 ENSEMBL cdna:SNAP chromosome:CEL140:II:8034400:8035688:-1 None
C08B11.5.3 ENSEMBL cdna:known chromosome:CEL140:II:8034400:8035690:-1 gene:C08B11.5 None
NM_001026763 NCBI Caenorhabditis elegans C08B11.9 (C08B11.9) mRNA, complete cds. None
C08B11.9 ENSEMBL cdna:known chromosome:CEL140:II:8034257:8038088:-1 gene:C08B11.9 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8034315-8034644(-) 80.46 80.46
Public Domain and Genome References
Gene Title actin

Ensembl C08B11.5
C08B11.9
Entrez Gene 174288 Entrez gene
3564855 Entrez gene
SwissProt Q09443 EMBL-EBI
Q09227 EMBL-EBI
WormBase CE30856 Wormbase
CE01479 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259242_AT actin-related protein 6 (ARP6) at
CANINE:1591980_AT similar to ARP6 actin-related protein 6 homolog cfa
CANINE_2:CFA.9426.1.S1_S_AT similar to ARP6 actin-related protein 6 homolog cfa
CANINE_2:CFAAFFX.11001.1.S1_S_AT similar to ARP6 actin-related protein 6 homolog cfa
CANINE_2:CFAAFFX.4645.1.S1_AT similar to CG31800-PA cfa
DROSOPHILA_2:1639228_AT Actin-related protein 13E dm
DROSGENOME1:141229_AT Actin-related protein 13E dm
DROSOPHILA_2:1635027_AT dm
CHICKEN:GGA.4483.1.S1_AT ARP6 actin-related protein 6 homolog (yeast) gga
CHICKEN:GGAAFFX.11865.1.S1_S_AT ARP6 actin-related protein 6 homolog (yeast) gga
CHICKEN:GGA.12146.1.S1_AT similar to hypothetical protein MGC955 gga
HG-U133_PLUS_2:218395_AT ARP6 actin-related protein 6 homolog (yeast) hs
HG-U133A:218395_AT ARP6 actin-related protein 6 homolog (yeast) hs
HG-U133A_2:218395_AT ARP6 actin-related protein 6 homolog (yeast) hs
HU35KSUBA:RC_AA463453_AT ARP6 actin-related protein 6 homolog (yeast) hs
U133_X3P:G11968056_3P_AT ARP6 actin-related protein 6 homolog (yeast) hs
U133_X3P:HS.311850.0.A1_3P_AT ARP6 actin-related protein 6 homolog (yeast) hs
HG-U133_PLUS_2:241794_AT ARP6 actin-related protein 6 homolog (yeast) hs
HG-U133B:241794_AT ARP6 actin-related protein 6 homolog (yeast) hs
HG-U95B:43049_AT ARP6 actin-related protein 6 homolog (yeast) hs
HG-U133_PLUS_2:239679_AT ARP6 actin-related protein 6 homolog (yeast) hs
HG-U133B:239679_AT ARP6 actin-related protein 6 homolog (yeast) hs
HG-U95E:81049_AT ARP6 actin-related protein 6 homolog (yeast) hs
HG-U95D:82223_AT ARP6 actin-related protein 6 homolog (yeast) hs
U133_X3P:HS.163778.0.A1_3P_AT ARP6 actin-related protein 6 homolog (yeast) hs
HG-U133_PLUS_2:219406_AT chromosome 1 open reading frame 50 hs
HG-U133A:219406_AT chromosome 1 open reading frame 50 hs
HG-U133A_2:219406_AT chromosome 1 open reading frame 50 hs
HU35KSUBC:RC_W42541_AT chromosome 1 open reading frame 50 hs
U133_X3P:G13129101_3P_S_AT chromosome 1 open reading frame 50 hs
U133_X3P:G13129101_3P_AT chromosome 1 open reading frame 50 hs
U133_X3P:62212_3P_AT chromosome 1 open reading frame 50 hs
U133_X3P:4858649_3P_AT chromosome 1 open reading frame 50 hs
HG-U133A_2:62212_AT chromosome 1 open reading frame 50 hs
HG-U133_PLUS_2:62212_AT chromosome 1 open reading frame 50 hs
HG-U133A:62212_AT chromosome 1 open reading frame 50 hs
HG-U95C:62212_AT chromosome 1 open reading frame 50 hs
HU35KSUBB:RC_N52298_AT Chromosome 1 open reading frame 50 hs
HU35KSUBD:RC_R07976_AT Chromosome 1 open reading frame 50 hs
MU11KSUBB:MSA.33709.0_S_AT ARP6 actin-related protein 6 homolog (yeast) mm
MU11KSUBB:MSA.32377.0_S_AT ARP6 actin-related protein 6 homolog (yeast) mm
MG-U74AV2:160666_AT ARP6 actin-related protein 6 homolog (yeast) mm
MOE430A:1428502_AT ARP6 actin-related protein 6 homolog (yeast) mm
MOUSE430A_2:1428502_AT ARP6 actin-related protein 6 homolog (yeast) mm
MOUSE430_2:1428502_AT ARP6 actin-related protein 6 homolog (yeast) mm
MU19KSUBB:TC31186_AT ARP6 actin-related protein 6 homolog (yeast) (Actr6), mRNA mm
MG-U74BV2:115878_AT expressed sequence AU022252 mm
MOE430B:1438226_AT expressed sequence AU022252 mm
MOUSE430_2:1438226_AT expressed sequence AU022252 mm
MG-U74BV2:114926_AT Expressed sequence AU022252 (AU022252), mRNA mm
MU19KSUBA:TC25311_AT Expressed sequence AU022252 (AU022252), mRNA mm
MU19KSUBC:TC37756_AT Expressed sequence AU022252 (AU022252), mRNA mm
MU19KSUBC:TC38697_S_AT Expressed sequence AU022252 (AU022252), mRNA mm
RG-U34C:RC_AI178447_AT ARP6 actin-related protein 6 homolog (yeast) (predicted) rn
RAE230A:1373472_AT ARP6 actin-related protein 6 homolog (yeast) (predicted) rn
RAT230_2:1373472_AT ARP6 actin-related protein 6 homolog (yeast) (predicted) rn
RG-U34B:RC_AA944840_AT similar to chromosome 1 open reading frame 50 rn
RAE230B:1392485_AT similar to chromosome 1 open reading frame 50 rn
RAT230_2:1392485_AT similar to chromosome 1 open reading frame 50 rn
RAE230B:1394327_AT similar to chromosome 1 open reading frame 50 rn
RAT230_2:1394327_AT similar to chromosome 1 open reading frame 50 rn
YEAST_2:1778168_AT Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes Sc
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
15629 actin cytoskeleton inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5200 structural constituent of cytoskeleton inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA86667 Hypothetical protein C08B11.6 [Caenorhabditis elegans] ref|NP_495681.4| C08B11.6 [Caenorhabditis elegans] sp|Q09443|ARP6_CAEEL Actin-like protein C08B11.6 0.0
blast AAC47513 actin-related protein-like [Caenorhabditis elegans] 0.0
blast T19072 hypothetical protein C08B11.6 - Caenorhabditis elegans 0.0
blast AAC47514 RRM-type RNA binding protein [Caenorhabditis elegans] 1.0E-147
blast CAB60993 Hypothetical protein C08B11.5 [Caenorhabditis elegans] sp|Q09442|YP85_CAEEL Hypothetical RNA-binding protein C08B11.5 in chromosome II 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR004000 EMBL-EBI Actin/actin-like 5.8E-35
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.1E-20
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.2E-22
Sequence
Target Sequence 
>C. ELEGANS:171819_X_AT
gccacctccaccagggatgagatatccgggaggcannnnnnnnnnnnnnnnnnnnnnnna
tctttntgatggaccaggaatgtatccacttccaccaccaagtngtcttccagcaccacc
atntggtcctggggtgatcccacgtccaccacgtccatcccaattactcgatcggagtgg
aataccttaatctttattttcagaaacttttg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACCTCCACCAGGGATGAGATAT 443 279 71 Antisense
CCAGGGATGAGATATCCGGGAGGCA 38 273 81 Antisense
GGACCAGGAATGTATCCACTTCCAC 309 523 141 Antisense
ACCAGGAATGTATCCACTTCCACCA 418 85 143 Antisense
GTCCATCCCAATTACTCGATCGGAG 32 477 223 Antisense
TCCATCCCAATTACTCGATCGGAGT 503 587 224 Antisense
CATCCCAATTACTCGATCGGAGTGG 201 209 226 Antisense
TCCCAATTACTCGATCGGAGTGGAA 259 595 228 Antisense
ATCGGAGTGGAATACCTTAATCTTT 141 1 241 Antisense
GGAATACCTTAATCTTTATTTTCAG 189 529 249 Antisense
TAATCTTTATTTTCAGAAACTTTTG 82 635 258 Antisense
Sequence Source Affymetrix Proprietary Database