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[171818_x_at] Forkhead-associated (FHA) domain

Description C52242_rc /REP_DB=TREMBL Accession /GB=C52242 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk240a2 : 3prime end, single read.
Cluster 6grp_total > 57      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 73.3
(3)
A 		51
(0.9)
A 		8.4
(-3)
A 		21.2
(-1.8)
A 		65
B 22.6
(-0.9)
A 		9.9
(-3)
A 		9.9
(-3)
A 		46.1
(3)
A 		36
C 52.1
(3)
A 		8.9
(-2.7)
A 		6.8
(-3)
A 		29
(-0.1)
A 		45
avr 49.3
(3) 		23.3
(-0.8) 		8.4
(-3) 		32.1
(0.5) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 8.4
(-2.7)
A 		22.3
(-1.3)
A 		31.2
(-0.4)
A 		5.1
(-3)
A 		25.4
(-1)
A 		65.4
(3)
A 		60
B 46.3
(3)
A 		15.4
(-3)
A 		19.5
(-2.2)
A 		16.8
(-2.7)
A 		19.2
(-2.3)
A 		44.6
(2.7)
A 		31
C 49.8
(1.3)
A 		39
(0.1)
A 		39.2
(0.1)
A 		10
(-3)
A 		9.9
(-3)
A 		66.1
(3)
A 		56
avr 34.8
(0) 		25.6
(-1.1) 		30
(-0.6) 		10.6
(-3) 		18.2
(-2.1) 		58.7
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.7
(3)
A 		11.1
(-0.8)
A 		2.2
(-3)
A 		3.1
(-2.8)
A 		25
B 7.2
(0.9)
A 		2.4
(-2.9)
A 		2.3
(-3)
A 		9.8
(3)
A 		8
C 17.2
(3)
A 		2.6
(-2.9)
A 		2.4
(-3)
A 		4.9
(-2)
A 		15
avr 17
(3) 		5.4
(-1.7) 		2.3
(-3) 		5.9
(-1.5) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.6
(-2.9)
A 		7.9
(-0.3)
A 		6.8
(-0.7)
A 		1.3
(-3)
A 		7.7
(-0.4)
A 		15.9
(3)
A 		15
B 16.1
(2.8)
A 		5.1
(-2.7)
A 		4.7
(-2.9)
A 		4.4
(-3)
A 		7.8
(-1.3)
A 		16.6
(3)
A 		12
C 18.5
(1.9)
A 		11.9
(-0)
A 		10
(-0.6)
A 		2
(-3)
A 		3.2
(-2.6)
A 		22.1
(3)
A 		20
avr 12.1
(0.7) 		8.3
(-0.8) 		7.2
(-1.2) 		2.6
(-3) 		6.2
(-1.6) 		18.2
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171818_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28046
Sequence Type Exemplar sequence
Representative Public ID C52242 NCBI
Target Description C52242_rc /REP_DB=TREMBL Accession /GB=C52242 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk240a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063576
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063576 NCBI Caenorhabditis elegans C01G6.5 (C01G6.5) mRNA, complete cds. None
C01G6.5 ENSEMBL cdna:known chromosome:CEL140:II:9274880:9280009:-1 gene:C01G6.5 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9274990-9275284(-) 89.25 89.25
Public Domain and Genome References
Gene Title Forkhead-associated (FHA) domain
Ensembl C01G6.5
Entrez Gene 174470 Entrez gene
SwissProt P46012 EMBL-EBI
WormBase CE00867 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84636 Hypothetical protein C01G6.5 [Caenorhabditis elegans] ref|NP_495977.1| C01G6.5 [Caenorhabditis elegans] sp|P46012|YKI5_CAEEL Hypothetical protein C01G6.5 in chromosome III 0.0
blast CAE57846 Hypothetical protein CBG00879 [Caenorhabditis briggsae] 8.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 5.3E-13
Sequence
Target Sequence 
>C. ELEGANS:171818_X_AT
tttggagattccgcacaattttagganaatttagccggggagattnnnnnatnatcccaa
catcatcannnnnnaccatcccaangagtagngtnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnncaagtttaattataatatactcgaccgaccgagcataggatgatgcagccaactg
acttaaatttctcactgttccctgt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGAGATTCCGCACAATTTTAGG 376 665 21 Antisense
AATTATAATATACTCGACCGACCGA 159 173 153 Antisense
ATAATATACTCGACCGACCGAGCAT 456 25 157 Antisense
ATATACTCGACCGACCGAGCATAGG 510 11 160 Antisense
ATACTCGACCGACCGAGCATAGGAT 529 21 162 Antisense
TCGACCGACCGAGCATAGGATGATG 227 601 166 Antisense
GACCGACCGAGCATAGGATGATGCA 370 381 168 Antisense
GACCGAGCATAGGATGATGCAGCCA 53 383 172 Antisense
TAGGATGATGCAGCCAACTGACTTA 214 655 181 Antisense
TGCAGCCAACTGACTTAAATTTCTC 60 579 189 Antisense
ACTTAAATTTCTCACTGTTCCCTGT 583 101 201 Antisense
Sequence Source Affymetrix Proprietary Database