[Home] | [Total List]

[171816_x_at]

Description CEC725_rc /REP_DB=TREMBL Accession /GB=C07725 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk158a6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 30      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 74      6grp_total > 44      4grp_total > 60      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 671.4
(1)
P 		624.4
(-0.2)
P 		750.7
(3)
P 		510.8
(-3)
P 		240
B 723.9
(0.1)
P 		787.1
(3)
P 		655.8
(-3)
P 		679.1
(-1.9)
P 		131
C 800.9
(1.8)
P 		856.7
(3)
P 		855.2
(3)
P 		576.7
(-3)
P 		280
avr 732.1
(2.1) 		756.1
(3) 		753.9
(2.9) 		588.9
(-3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 542
1 2 3 4 5 6 range
A 571.8
(-0.9)
P 		685.9
(0.4)
P 		925.4
(3)
P 		641.7
(-0.1)
P 		383.1
(-3)
P 		509.9
(-1.6)
P 		542
B 694.9
(2)
P 		708.2
(2.4)
P 		729
(3)
P 		614.9
(-0.4)
P 		526.3
(-3)
P 		566.9
(-1.8)
P 		203
C 760.5
(3)
P 		713.5
(1.4)
P 		756.7
(2.9)
P 		587.1
(-3)
P 		633.5
(-1.4)
P 		672.8
(-0)
P 		173
avr 675.7
(0.3) 		702.5
(0.9) 		803.7
(3) 		614.6
(-0.9) 		514.3
(-3) 		583.2
(-1.6) 		289
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 244.4
(3)
P 		135.5
(-0.9)
P 		196.2
(1.3)
P 		74.8
(-3)
P 		170
B 230.8
(3)
P 		194.4
(0.5)
P 		152
(-2.5)
P 		144.7
(-3)
P 		86
C 265.1
(2)
P 		246.3
(1.5)
P 		298.1
(3)
P 		97.2
(-3)
P 		201
avr 246.8
(3) 		192.1
(0.7) 		215.4
(1.7) 		105.6
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 105.4
(-3)
P 		243.9
(3)
P 		201.5
(1.2)
P 		162.8
(-0.5)
P 		115.6
(-2.6)
P 		124.1
(-2.2)
P 		139
B 241.8
(3)
P 		235.7
(2.5)
P 		177
(-1.9)
P 		162.9
(-3)
P 		213.8
(0.9)
P 		211.4
(0.7)
P 		79
C 281.9
(3)
P 		217.7
(0.6)
P 		192.6
(-0.3)
P 		118.1
(-3)
P 		205
(0.2)
P 		225.2
(0.9)
P 		164
avr 209.7
(1.4) 		232.4
(3) 		190.4
(0) 		147.9
(-3) 		178.1
(-0.9) 		186.9
(-0.2) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171816_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28030
Sequence Type Exemplar sequence
Representative Public ID CEC725 NCBI
Target Description CEC725_rc /REP_DB=TREMBL Accession /GB=C07725 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk158a6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064874
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K02F3.10 ENSEMBL cdna:known chromosome:CEL140:III:851387:852384:-1 gene:K02F3.10 A 
SNAP00000008341 ENSEMBL cdna:SNAP chromosome:CEL140:III:851434:852384:-1 None
NM_064874 NCBI Caenorhabditis elegans K02F3.10 (K02F3.10) mRNA, complete cds. A 
GENEFINDER00000008348 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:851434:852384:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:851386-851741(-) 90.13 90.13
Public Domain and Genome References
Gene Title
Ensembl K02F3.10
Entrez Gene 175243 Entrez gene
SwissProt Q21154 EMBL-EBI
WormBase CE01346 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6418 tRNA aminoacylation for protein translation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4812 tRNA ligase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21418 Hypothetical protein K02F3.10 [Caenorhabditis elegans] ref|NP_497275.1| K02F3.10 [Caenorhabditis elegans] 1.0E-112
blast CAE56474 Hypothetical protein CBG24188 [Caenorhabditis briggsae] 2.0E-97
blast NP_001030203 hypothetical protein LOC506138 [Bos taurus] gb|AAI03215.1| Unknown (protein for MGC:128446) [Bos taurus] 3.0E-9
Sequence
Target Sequence 
>C. ELEGANS:171816_X_AT
gccgcatcatcaccgtgtggaatggccggattcgttttaggcctgaaacgtggcccggtc
ggacgtctcctcaccactaccatcggcttggccacgatgcccgccttttgttatccgata
gaggctgttgacgtggcaaagcccggaagagctcatgctgaacaaacttggtattccttc
caagaatctccaacgccatctgccatcgtcgaaacgaacttgagcccaccgaaatcactg
gttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGCATCATCACCGTGTGGAATGG 652 285 30 Antisense
ATGGCCGGATTCGTTTTAGGCCTGA 580 51 51 Antisense
TTAGGCCTGAAACGTGGCCCGGTCG 310 1 66 Antisense
CCCGCCTTTTGTTATCCGATAGAGG 698 257 129 Antisense
GAGGCTGTTGACGTGGCAAAGCCCG 248 403 150 Antisense
GCAAAGCCCGGAAGAGCTCATGCTG 608 317 165 Antisense
GCTGAACAAACTTGGTATTCCTTCC 195 295 186 Antisense
TATTCCTTCCAAGAATCTCCAACGC 515 663 201 Antisense
GCCATCTGCCATCGTCGAAACGAAC 511 281 224 Antisense
TCGTCGAAACGAACTTGAGCCCACC 312 605 235 Antisense
TGAGCCCACCGAAATCACTGGTTAA 694 567 250 Antisense
Sequence Source Affymetrix Proprietary Database