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[171815_x_at] oligopeptide transporter

Description C55236_rc /REP_DB=TREMBL Accession /GB=C55236 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk395d2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_high_8_8 > 29      6grp_highest_nonorm > 90      6grp_total > 94      4grp_total > 42      6grp_cgc > 89      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 84.6
(-2.6)
P 		119.6
(3)
P 		81.9
(-3)
P 		82.4
(-2.9)
A 		38
B 83.5
(-2.2)
P 		80.8
(-3)
P 		93.6
(0.9)
P 		100.7
(3)
P 		20
C 82.5
(2.3)
P 		80.3
(0.5)
P 		83.3
(3)
P 		76.2
(-3)
A 		7
avr 83.5
(-3) 		93.6
(3) 		86.3
(-1.3) 		86.4
(-1.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 89.7
(-1.6)
P 		50.7
(-2.7)
P 		41.4
(-3)
P 		67.3
(-2.2)
P 		242.5
(3)
P 		134.7
(-0.2)
P 		201
B 81.6
(-2.1)
P 		85.5
(-1.9)
P 		65.8
(-3)
P 		107
(-0.7)
P 		174.9
(3)
P 		146.6
(1.4)
P 		109
C 119.8
(-1.3)
P 		76
(-2.4)
P 		55.1
(-3)
P 		87.2
(-2.2)
P 		282.1
(3)
P 		105.5
(-1.7)
P 		227
avr 97
(-1.6) 		70.7
(-2.4) 		54.1
(-3) 		87.2
(-1.9) 		233.2
(3) 		128.9
(-0.5) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 30.8
(3)
P 		26
(1.5)
P 		21.4
(-0)
P 		12.1
(-3)
A 		19
B 26.6
(3)
P 		19.9
(-3)
P 		21.7
(-1.4)
P 		21.5
(-1.6)
P 		7
C 27.3
(2.4)
P 		23.1
(0.8)
P 		29
(3)
P 		12.8
(-3)
A 		16
avr 28.2
(3) 		23
(0.5) 		24
(1) 		15.5
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 16.5
(-2.3)
P 		18
(-2.2)
P 		9
(-3)
P 		17.1
(-2.2)
P 		73.2
(3)
P 		32.8
(-0.8)
P 		64
B 28.4
(-1.6)
P 		28.5
(-1.6)
P 		16
(-3)
P 		28.3
(-1.7)
P 		71
(3)
P 		54.6
(1.2)
P 		55
C 44.4
(-0.6)
P 		23.2
(-2.3)
P 		14
(-3)
P 		17.5
(-2.7)
P 		91.3
(3)
P 		35.3
(-1.3)
P 		77
avr 29.8
(-1.5) 		23.2
(-2.1) 		13
(-3) 		21
(-2.3) 		78.5
(3) 		40.9
(-0.4) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171815_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27996
Sequence Type Exemplar sequence
Representative Public ID C55236 NCBI
Target Description C55236_rc /REP_DB=TREMBL Accession /GB=C55236 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk395d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069601
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000028245 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10790652:10794390:1 None
GENEFINDER00000028247 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10790652:10794390:1 None
NM_069601 NCBI Caenorhabditis elegans OligoPeptide Transporter family member (opt-1) (opt-1) mRNA, complete cds. A 
C06G8.2 ENSEMBL cdna:known chromosome:CEL140:IV:10790532:10794538:1 gene:C06G8.2 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10794239-10794472(+) 70.72 70.72
Public Domain and Genome References
Gene Title oligopeptide transporter
Gene Symbol opt-1
Ensembl C06G8.2
Entrez Gene 177973 Entrez gene
SwissProt Q17758 EMBL-EBI
WormBase CE28887 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251882_AT proton-dependent oligopeptide transport (POT) family protein at
CANINE:1582534_AT solute carrier family 15 (oligopeptide transporter), member 1 cfa
CANINE_2:CFA.78.1.S1_S_AT solute carrier family 15 (oligopeptide transporter), member 1 cfa
DROSOPHILA_2:1627277_S_AT dm
DROSGENOME1:151495_AT dm
DROSOPHILA_2:1624796_AT dm
DROSGENOME1:142205_AT dm
CHICKEN:GGA.4106.1.S1_AT solute carrier family 15 (oligopeptide transporter), member 1 gga
HG-U133_PLUS_2:211349_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U133A:211349_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-FOCUS:211349_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U133A_2:211349_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U133_PLUS_2:207254_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U133A:207254_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U133A_2:207254_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HUGENEFL:U21936_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
U133_X3P:G4827007_3P_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
U133_X3P:G2506042_3P_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U95AV2:31628_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U95AV2:32906_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U95C:56963_F_AT solute carrier family 15 (oligopeptide transporter), member 1 hs
HG-U95E:70856_R_AT Solute carrier family 15 (oligopeptide transporter), member 1 hs
MOUSE430_2:1419343_AT solute carrier family 15 (oligopeptide transporter), member 1 mm
MOE430A:1419343_AT solute carrier family 15 (oligopeptide transporter), member 1 mm
MOUSE430A_2:1419343_AT solute carrier family 15 (oligopeptide transporter), member 1 mm
YEAST_2:1777376_AT Integral membrane peptide transporter, mediates transport of di- and tri-peptides; conserved protein that contains 12 transmembrane domains; PTR2 expression is regulated by the N-end rule pathway via repression by Cup9p Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6857 oligopeptide transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
15198 oligopeptide transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94323 Hypothetical protein C06G8.2 [Caenorhabditis elegans] ref|NP_502002.1| OligoPeptide Transporter family member (opt-1) [Caenorhabditis elegans] sp|Q17758|OPT1_CAEEL Oligopeptide transporter 1 (Di-/tri-peptide transporter CPTA) 0.0
blast AAC39118 high-affinity peptide transporter [Caenorhabditis elegans] 0.0
blast T19017 hypothetical protein C06G8.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000109 EMBL-EBI TGF-beta receptor, type I/II extracellular region 1.0E-126
Pfam IPR000109 EMBL-EBI TGF-beta receptor, type I/II extracellular region 8.1E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502002.1 10 70-92,99-121,134-156,169-191,206-228,300-317,346-368,381-403,709-731,738-760
C06G8.2 10 70-92,99-121,134-156,169-191,206-228,300-317,346-368,381-403,709-731,738-760
SNAP00000028245 10 70-92,99-121,134-156,169-191,206-228,300-317,346-368,381-403,709-731,738-760
GENEFINDER00000028247 10 70-92,99-121,134-156,169-191,206-228,300-317,346-368,381-403,709-731,738-760
Sequence
Target Sequence 
>C. ELEGANS:171815_X_AT
catgcttttcgttatattcgttttcattttacttgcagtcttttattacgagtatgctga
ttattcgaatgaaagtgaagttctcacggagaaaatgattgtcgccgatgatcatactcg
catttgatttgccactccttgaagaattcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGCTTTTCGTTATATTCGTTTTC 220 211 107 Antisense
ATTCGTTTTCATTTTACTTGCAGTC 203 9 122 Antisense
TTTACTTGCAGTCTTTTATTACGAG 446 673 134 Antisense
GCAGTCTTTTATTACGAGTATGCTG 89 313 141 Antisense
GAGTATGCTGATTATTCGAATGAAA 195 399 156 Antisense
TCTCACGGAGAAAATGATTGTCGCC 698 611 188 Antisense
GATTGTCGCCGATGATCATACTCGC 509 431 203 Antisense
TCGCCGATGATCATACTCGCATTTG 586 599 208 Antisense
TACTCGCATTTGATTTGCCACTCCT 60 647 221 Antisense
TTGATTTGCCACTCCTTGAAGAATT 421 687 230 Antisense
TTTGCCACTCCTTGAAGAATTCATT 176 669 234 Antisense
Sequence Source Affymetrix Proprietary Database