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[171811_s_at]

Description C57047_rc /REP_DB=TREMBL Accession /GB=C57047 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk279a12 : 3prime end, single read.
Cluster 6grp_total > 98      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 12.7
(-3)
A 		129.4
(3)
A 		72.4
(0.1)
A 		93.4
(1.1)
A 		117
B 31.8
(-1.5)
A 		67.1
(0.7)
A 		105.9
(3)
A 		6.1
(-3)
A 		100
C 66.1
(-1)
A 		116.8
(3)
A 		40.2
(-3)
A 		96.7
(1.4)
A 		77
avr 36.9
(-3) 		104.4
(3) 		72.8
(0.2) 		65.4
(-0.5) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1118
1 2 3 4 5 6 range
A 8.2
(-3)
A 		24.5
(-2.9)
A 		47.7
(-2.8)
A 		159.8
(-2.2)
P 		566
(-0)
P 		1125.9
(3)
P 		1118
B 43.5
(-2.7)
A 		7.6
(-3)
A 		65.9
(-2.6)
A 		104.1
(-2.3)
P 		653.2
(1.7)
P 		828.3
(3)
P 		821
C 35.5
(-3)
A 		55.5
(-2.9)
A 		56.7
(-2.9)
A 		106.4
(-2.5)
P 		896.2
(2.6)
P 		961.5
(3)
P 		926
avr 29.1
(-3) 		29.2
(-3) 		56.8
(-2.8) 		123.4
(-2.4) 		705.1
(1.3) 		971.9
(3) 		943
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 4.6
(-3)
A 		28.1
(3)
A 		18.9
(0.7)
A 		13.7
(-0.7)
A 		24
B 10.1
(-0.7)
A 		16.6
(1)
A 		24.5
(3)
A 		1.3
(-3)
A 		23
C 21.9
(-0.6)
A 		33.6
(3)
A 		14
(-3)
A 		16.3
(-2.3)
A 		20
avr 12.2
(-2.3) 		26.1
(3) 		19.1
(0.3) 		10.4
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 1.5
(-3)
A 		8.7
(-2.8)
A 		10.4
(-2.8)
A 		40.5
(-2.1)
P 		170.8
(0.7)
P 		274.1
(3)
P 		273
B 15.1
(-2.8)
A 		2.5
(-3)
A 		16
(-2.7)
A 		27.6
(-2.5)
P 		265.4
(2.1)
P 		308.9
(3)
P 		306
C 13.2
(-3)
A 		16.9
(-2.9)
A 		14.4
(-3)
A 		21.4
(-2.8)
P 		290
(2.4)
P 		321.9
(3)
P 		309
avr 9.9
(-3) 		9.4
(-3) 		13.6
(-2.9) 		29.8
(-2.6) 		242.1
(1.8) 		301.6
(3) 		292
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171811_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27906
Sequence Type Exemplar sequence
Representative Public ID C57047 NCBI
Target Description C57047_rc /REP_DB=TREMBL Accession /GB=C57047 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk279a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073701(11), NM_073705(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073701 NCBI Caenorhabditis elegans K01D12.15 (K01D12.15) mRNA, complete cds. 11/11 A 
NM_073705 NCBI Caenorhabditis elegans K01D12.7 (K01D12.7) mRNA, complete cds. 11/11 A 
SNAP00000007089 ENSEMBL cdna:SNAP chromosome:CEL140:V:12389042:12389296:1 11/11 None
SNAP00000007094 ENSEMBL cdna:SNAP chromosome:CEL140:V:12403817:12404071:-1 11/11 None
GENEFINDER00000007103 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12403817:12404071:-1 11/11 None
GENEFINDER00000007110 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12389042:12389296:1 11/11 None
K01D12.15 ENSEMBL cdna:known chromosome:CEL140:V:12388863:12389357:1 gene:K01D12.15 11/11 A 
K01D12.7 ENSEMBL cdna:known chromosome:CEL140:V:12403738:12404433:-1 gene:K01D12.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12389071-12389283(+) 69.67 69.67
Public Domain and Genome References
Gene Title

Ensembl K01D12.15
K01D12.7
Entrez Gene 179698 Entrez gene
179701 Entrez gene
SwissProt Q27223 EMBL-EBI
Q95QD3 EMBL-EBI
WormBase CE28043 Wormbase
CE28483 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99866 Hypothetical protein K01D12.7 [Caenorhabditis elegans] ref|NP_506106.1| K01D12.7 [Caenorhabditis elegans] 3.0E-52
blast CAA99878 Hypothetical protein K01D12.15 [Caenorhabditis elegans] ref|NP_506102.1| K01D12.15 [Caenorhabditis elegans] 9.0E-37
blast CAA99878 Hypothetical protein K01D12.15 [Caenorhabditis elegans] ref|NP_506102.1| K01D12.15 [Caenorhabditis elegans] 1.0E-33
blast CAA99866 Hypothetical protein K01D12.7 [Caenorhabditis elegans] ref|NP_506106.1| K01D12.7 [Caenorhabditis elegans] 3.0E-29
blast CAA16354 Hypothetical protein Y45F10B.3 [Caenorhabditis elegans] ref|NP_502622.1| Y45F10B.3 [Caenorhabditis elegans] 1.0E-10
blast CAB62795 Hypothetical protein C47A4.5 [Caenorhabditis elegans] ref|NP_502651.1| C47A4.5 [Caenorhabditis elegans] 1.0E-10
Sequence
Target Sequence 
>C. ELEGANS:171811_S_AT
aaaccaccaaaagccagtgcaagtgcaaccaaagcagccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACCACCAAAAGCCAGTGCAAGTG 517 125 167 Antisense
AACCACCAAAAGCCAGTGCAAGTGC 546 147 168 Antisense
ACCACCAAAAGCCAGTGCAAGTGCA 324 85 169 Antisense
CCACCAAAAGCCAGTGCAAGTGCAA 507 271 170 Antisense
ACCAAAAGCCAGTGCAAGTGCAACC 286 85 172 Antisense
AAAAGCCAGTGCAAGTGCAACCAAA 520 131 175 Antisense
AAGCCAGTGCAAGTGCAACCAAAGC 397 149 177 Antisense
GCCAGTGCAAGTGCAACCAAAGCAG 686 279 179 Antisense
CAGTGCAAGTGCAACCAAAGCAGCC 549 207 181 Antisense
GTGCAAGTGCAACCAAAGCAGCCGC 182 481 183 Antisense
TGCAAGTGCAACCAAAGCAGCCGCT 48 575 184 Antisense
Sequence Source Affymetrix Proprietary Database