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[171810_x_at]

Description C53589_rc /REP_DB=TREMBL Accession /GB=C53589 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk321e11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 40      6grp_total > 06      4grp_total > 46      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 934
1 2 3 4 range
A 1328.8
(3)
P 		640.4
(-1.4)
P 		456.1
(-2.6)
P 		395
(-3)
P 		934
B 1171.7
(3)
P 		569.2
(-1.8)
P 		423.6
(-3)
P 		463.8
(-2.7)
P 		748
C 1323.4
(3)
P 		739.3
(-1.1)
P 		539.1
(-2.5)
P 		470.1
(-3)
P 		853
avr 1274.6
(3) 		649.6
(-1.5) 		472.9
(-2.8) 		443
(-3) 		832

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1082
1 2 3 4 5 6 range
A 918.9
(3)
P 		867.4
(2.5)
P 		567.6
(-0.6)
P 		365.3
(-2.7)
P 		443.6
(-1.9)
P 		336.8
(-3)
P 		582
B 892.1
(3)
P 		698
(0.8)
P 		388.2
(-2.7)
P 		423
(-2.3)
P 		379.2
(-2.8)
P 		364.9
(-3)
P 		527
C 1399.9
(3)
P 		747.5
(-0.6)
P 		554.9
(-1.7)
P 		442.9
(-2.3)
P 		318.2
(-3)
P 		392.1
(-2.6)
P 		1082
avr 1070.3
(3) 		771
(0.5) 		503.6
(-1.8) 		410.4
(-2.6) 		380.3
(-2.9) 		364.6
(-3) 		706
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 426
1 2 3 4 range
A 483.8
(3)
P 		139
(-1.9)
P 		119.2
(-2.1)
P 		57.8
(-3)
P 		426
B 373.7
(3)
P 		140.6
(-2.1)
P 		98.2
(-3)
P 		98.8
(-3)
P 		276
C 438.1
(3)
P 		212.5
(-0.8)
P 		187.9
(-1.2)
P 		79.3
(-3)
P 		359
avr 431.9
(3) 		164
(-1.5) 		135.1
(-2) 		78.6
(-3) 		353

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 437
1 2 3 4 5 6 range
A 169.4
(-0.7)
P 		308.5
(3)
P 		123.6
(-1.9)
P 		92.6
(-2.7)
P 		133.9
(-1.6)
P 		82
(-3)
P 		227
B 310.4
(3)
P 		232.3
(0.8)
P 		94.3
(-3)
P 		112
(-2.5)
P 		154.1
(-1.3)
P 		136.1
(-1.8)
P 		216
C 518.9
(3)
P 		228.1
(-1.1)
P 		141.2
(-2.3)
P 		89.1
(-3)
P 		103
(-2.8)
P 		131.3
(-2.4)
P 		430
avr 332.9
(3) 		256.3
(1) 		119.7
(-2.4) 		97.9
(-3) 		130.3
(-2.2) 		116.5
(-2.5) 		235
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171810_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27860
Sequence Type Exemplar sequence
Representative Public ID C53589 NCBI
Target Description C53589_rc /REP_DB=TREMBL Accession /GB=C53589 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk321e11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C53589
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C53589 C53589_rc /REP_DB=TREMBL Accession /GB=C53589 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk321e11 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171616 6/11 Cross Hyb Matching Probes None
NM_171615 6/11 Cross Hyb Matching Probes A 
F02G3.1b 6/11 Cross Hyb Matching Probes A 
F02G3.1a 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:702702-702975(+) 82.67 82.67
Sequence
Target Sequence 
>C. ELEGANS:171810_X_AT
acacaactctcatttgttcggttgcatcnnnnnnnagtaactnaatacaattcaatgctt
catcatctaantatggtccaattctttgannnnnctcatttgctaatgagtgatttccct
cactccttccgtgnnnnnnncgggaggtcgggtccacttgctatacttaattgtcatccc
gaagttac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACAACTCTCATTTGTTCGGTTGC 26 111 69 Antisense
CAACTCTCATTTGTTCGGTTGCATC 563 187 72 Antisense
AATACAATTCAATGCTTCATCATCT 71 173 112 Antisense
TACAATTCAATGCTTCATCATCTAA 86 643 114 Antisense
CATTTGCTAATGAGTGATTTCCCTC 494 215 165 Antisense
AATGAGTGATTTCCCTCACTCCTTC 507 163 173 Antisense
CGGGTCCACTTGCTATACTTAATTG 534 1 217 Antisense
GGTCCACTTGCTATACTTAATTGTC 131 503 219 Antisense
ACTTGCTATACTTAATTGTCATCCC 125 105 224 Antisense
TGCTATACTTAATTGTCATCCCGAA 618 577 227 Antisense
TACTTAATTGTCATCCCGAAGTTAC 604 643 232 Antisense
Sequence Source Affymetrix Proprietary Database