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[171808_x_at]

Description CEK007E7R_rc /REP_DB=TREMBL Accession /GB=D27432 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk7e7 : 3prime end, single read.
Cluster 6grp_total > 54      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 123.3
(3)
A 		28.9
(-3)
A 		46
(-1.9)
A 		111.2
(2.2)
A 		94
B 153.1
(3)
A 		95
(-0.7)
A 		58.2
(-3)
A 		140.4
(2.2)
A 		95
C 110.6
(3)
A 		103.8
(2)
A 		90.1
(-0)
A 		69.8
(-3)
A 		41
avr 129
(3) 		75.9
(-2) 		64.8
(-3) 		107.1
(1) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 30.4
(-2.4)
A 		72.1
(2.5)
A 		54.8
(0.5)
A 		67.8
(2)
A 		76.4
(3)
A 		25.4
(-3)
A 		51
B 100.7
(3)
A 		71.9
(-3)
A 		88.1
(0.4)
A 		83.5
(-0.6)
A 		99.5
(2.8)
A 		99.8
(2.8)
A 		29
C 91.9
(1.1)
A 		66.1
(-1.1)
A 		108.7
(2.5)
A 		42.8
(-3)
A 		54.5
(-2)
A 		114.9
(3)
M 		72
avr 74.3
(-0) 		70
(-1.3) 		83.9
(3) 		64.7
(-3) 		76.8
(0.8) 		80
(1.8) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 44.9
(3)
A 		6.3
(-3)
A 		12
(-2.1)
A 		16.3
(-1.4)
A 		39
B 48.8
(3)
A 		23.5
(-1.3)
A 		13.5
(-3)
A 		29.9
(-0.2)
A 		35
C 36.6
(3)
A 		29.8
(1.4)
A 		31.4
(1.7)
A 		11.8
(-3)
A 		25
avr 43.4
(3) 		19.9
(-2.8) 		19
(-3) 		19.3
(-2.9) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 5.6
(-3)
A 		25.6
(3)
A 		11.9
(-1.1)
A 		17.2
(0.5)
A 		23.1
(2.3)
A 		6.2
(-2.8)
A 		20
B 35
(1.3)
A 		23.9
(-2.2)
A 		21.4
(-3)
A 		22.1
(-2.8)
A 		40.4
(3)
A 		37.2
(2)
A 		19
C 34.1
(2.1)
A 		20.2
(-0.7)
A 		27.7
(0.8)
A 		8.6
(-3)
A 		17.6
(-1.2)
A 		38.5
(3)
M 		30
avr 24.9
(1.7) 		23.2
(0.8) 		20.3
(-0.7) 		16
(-3) 		27
(2.8) 		27.3
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171808_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27851
Sequence Type Exemplar sequence
Representative Public ID CEK007E7R NCBI
Target Description CEK007E7R_rc /REP_DB=TREMBL Accession /GB=D27432 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk7e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077759
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077759 NCBI Caenorhabditis elegans F11C1.5a (F11C1.5) mRNA, complete cds. A 
F11C1.5a ENSEMBL cdna:known chromosome:CEL140:X:12991418:12999548:1 gene:F11C1.5 A 
GENEFINDER00000035049 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12989413:12999491:1 None
SNAP00000035044 ENSEMBL cdna:SNAP chromosome:CEL140:X:12995729:12999491:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12999026-12999525(+) 89.54 89.54
Public Domain and Genome References
Ensembl F11C1.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91030 Hypothetical protein F11C1.5a [Caenorhabditis elegans] ref|NP_510160.1| F11C1.5a [Caenorhabditis elegans] 0.0
blast CAE70359 Hypothetical protein CBG16916 [Caenorhabditis briggsae] 0.0
blast CAA91031 Hypothetical protein F11C1.5b [Caenorhabditis elegans] ref|NP_510161.1| F11C1.5b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:171808_X_AT
gagatttcaattttcaatccacagaattggccccttagatagatgattttgatgaaaccg
ttgtcattttggtgtcagatgctaatttgggaaggtatggaattcaaccgcaggaattgn
aagatgcaatggctaaagagccaaatatcaactcatttgtcattttcattgggtgcgctc
agtgacgaagccgaccagctacaccgagagttgcctgttggagaagcttttgttttaaaa
gacacttctgagcttgccgaccaattatggagacca

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATTTCAATTTTCAATCCACAGA 56 397 68 Antisense
ATCCACAGAATTGGCCCCTTAGATA 25 41 84 Antisense
TGGCCCCTTAGATAGATGATTTTGA 439 543 95 Antisense
GAAACCGTTGTCATTTTGGTGTCAG 169 359 121 Antisense
AACTCATTTGTCATTTTCATTGGGT 521 139 217 Antisense
TTCATTGGGTGCGCTCAGTGACGAA 606 687 232 Antisense
TCAGTGACGAAGCCGACCAGCTACA 407 623 246 Antisense
ACCAGCTACACCGAGAGTTGCCTGT 701 85 261 Antisense
GAGTTGCCTGTTGGAGAAGCTTTTG 680 397 275 Antisense
AAAAGACACTTCTGAGCTTGCCGAC 273 131 304 Antisense
GCTTGCCGACCAATTATGGAGACCA 285 307 319 Antisense
Sequence Source Affymetrix Proprietary Database