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[171807_x_at]

Description CEC3124_rc /REP_DB=TREMBL Accession /GB=C11312 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk170e3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      6grp_highest_nonorm > 52      6grp_total > 10      4grp_total > 50      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1473
1 2 3 4 range
A 77.5
(-3)
A 		1539.9
(3)
P 		981.5
(0.7)
P 		228.8
(-2.4)
A 		1462
B 67.3
(-3)
A 		1314.5
(3)
P 		1123.1
(2.1)
P 		101.9
(-2.8)
A 		1247
C 73.2
(-3)
A 		1391.5
(3)
P 		1012.3
(1.3)
P 		118.1
(-2.8)
A 		1318
avr 72.7
(-3) 		1415.3
(3) 		1039
(1.3) 		149.6
(-2.7) 		1343

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1261
1 2 3 4 5 6 range
A 193.1
(-3)
P 		1307.4
(3)
P 		1056.2
(1.6)
P 		617.7
(-0.7)
P 		437.4
(-1.7)
P 		421.5
(-1.8)
P 		1114
B 250.5
(-3)
P 		1453.6
(3)
P 		1137.5
(1.4)
P 		474.2
(-1.9)
P 		548.4
(-1.5)
P 		457.7
(-2)
P 		1203
C 307.4
(-3)
P 		1312.3
(3)
P 		656.2
(-0.9)
P 		500.3
(-1.8)
P 		681.8
(-0.8)
P 		402.9
(-2.4)
P 		1005
avr 250.3
(-3) 		1357.8
(3) 		950
(0.8) 		530.7
(-1.5) 		555.9
(-1.3) 		427.4
(-2) 		1108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 380
1 2 3 4 range
A 28.2
(-3)
A 		334.3
(3)
P 		256.6
(1.5)
P 		33.5
(-2.9)
A 		306
B 21.5
(-3)
A 		324.7
(3)
P 		260.3
(1.7)
P 		21.7
(-3)
A 		303
C 24.2
(-2.9)
A 		400.1
(3)
P 		352.8
(2.3)
P 		19.9
(-3)
A 		380
avr 24.6
(-3) 		353
(3) 		289.9
(1.8) 		25
(-3) 		328

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 448
1 2 3 4 5 6 range
A 35.6
(-3)
P 		465
(3)
P 		230
(-0.3)
P 		156.7
(-1.3)
P 		132
(-1.7)
P 		102.6
(-2.1)
P 		429
B 87.2
(-3)
P 		483.8
(3)
P 		276.2
(-0.1)
P 		125.6
(-2.4)
P 		222.8
(-0.9)
P 		170.7
(-1.7)
P 		397
C 113.9
(-2.7)
P 		400.4
(3)
P 		167
(-1.7)
P 		100.6
(-3)
P 		220.6
(-0.6)
P 		134.9
(-2.3)
P 		300
avr 78.9
(-3) 		449.7
(3) 		224.4
(-0.6) 		127.6
(-2.2) 		191.8
(-1.2) 		136.1
(-2.1) 		371
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171807_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27743
Sequence Type Exemplar sequence
Representative Public ID CEC3124 NCBI
Target Description CEC3124_rc /REP_DB=TREMBL Accession /GB=C11312 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk170e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071918(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071918 NCBI Caenorhabditis elegans C02E7.7 (C02E7.7) mRNA, complete cds. 9/11 A 
C02E7.7 ENSEMBL cdna:known chromosome:CEL140:V:4917598:4918399:-1 gene:C02E7.7 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015181 4/11 Cross Hyb Matching Probes None
GENEFINDER00000015193 4/11 Cross Hyb Matching Probes None
SNAP00000043269 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043284 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4917967-4918378(-) 65.98 65.98
Public Domain and Genome References
Gene Title
Ensembl C02E7.7
Entrez Gene 178884 Entrez gene
SwissProt O16427 EMBL-EBI
WormBase CE07844 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:171807_X_AT
cgagcccaaatcatgcgtttcttcgtcatcttcacttctttggtcgctcccacttcagct
ttcttgttcccatccggaggaggtggtggatgcggatgttnnnnnnnnnnnnnnnnnnnn
ncctgcggatgcggaggaggtggcggcggatacgctgctccaccaccagcctacgctgct
ccagccggaggatacgccgtcgccggaaaataagcgaattgacttcgagaaacagtttct
gtaaattttga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGCCCAAATCATGCGTTTCTTCG 574 249 106 Antisense
AAATCATGCGTTTCTTCGTCATCTT 594 117 113 Antisense
CTTGTTCCCATCCGGAGGAGGTGGT 423 217 168 Antisense
GTTCCCATCCGGAGGAGGTGGTGGA 255 439 171 Antisense
GGAGGAGGTGGTGGATGCGGATGTT 104 517 181 Antisense
CTGCGGATGCGGAGGAGGTGGCGGC 61 237 228 Antisense
CGGAGGAGGTGGCGGCGGATACGCT 532 241 237 Antisense
GGATACGCCGTCGCCGGAAAATAAG 27 1 295 Antisense
GCCGGAAAATAAGCGAATTGACTTC 545 283 307 Antisense
AATTGACTTCGAGAAACAGTTTCTG 537 173 322 Antisense
GAGAAACAGTTTCTGTAAATTTTGA 371 311 332 Antisense
Sequence Source Affymetrix Proprietary Database