[Home] | [Total List]

[171805_x_at] histone h1

Description CEC501_rc /REP_DB=TREMBL Accession /GB=C07501 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk141a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 02      6grp_total > 38      4grp_total > 10      6grp_highest_sub > Cu      6grp_cgc > 07      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5117
1 2 3 4 range
A 2368
(-3)
P 		2722.4
(-2.5)
P 		2550
(-2.8)
P 		7031.3
(3)
P 		4663
B 2146.4
(-3)
P 		2877
(-2.1)
P 		2238.8
(-2.9)
P 		7261.4
(3)
P 		5115
C 2144.3
(-3)
P 		2876.6
(-2)
P 		2315
(-2.8)
P 		6752.8
(3)
P 		4609
avr 2219.6
(-3) 		2825.3
(-2.2) 		2367.9
(-2.8) 		7015.2
(3) 		4796

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3589
1 2 3 4 5 6 range
A 4314.6
(3)
P 		2342.6
(-0.7)
P 		1159.4
(-2.9)
P 		1128
(-3)
P 		1438.1
(-2.4)
P 		3654.3
(1.8)
P 		3187
B 4717
(3)
P 		2229
(-1.3)
P 		1582.9
(-2.4)
P 		1243
(-3)
P 		1417.3
(-2.7)
P 		3256
(0.5)
P 		3474
C 3834.8
(3)
P 		2243.2
(-0.7)
P 		1601.5
(-2.3)
P 		1286.3
(-3)
P 		1632.8
(-2.2)
P 		2927.4
(0.9)
P 		2549
avr 4288.8
(3) 		2271.6
(-0.9) 		1447.9
(-2.6) 		1219.1
(-3) 		1496.1
(-2.5) 		3279.2
(1) 		3070
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1029
1 2 3 4 range
A 862.2
(0.7)
P 		591
(-3)
P 		666.6
(-2)
P 		1029.2
(3)
P 		438
B 684.5
(-2)
P 		710.5
(-1.9)
P 		518.8
(-3)
P 		1547.4
(3)
P 		1029
C 709.8
(-3)
P 		827.1
(-1.4)
P 		806.9
(-1.6)
P 		1138.6
(3)
P 		429
avr 752.2
(-2.1) 		709.5
(-2.5) 		664.1
(-3) 		1238.4
(3) 		574

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1389
1 2 3 4 5 6 range
A 795.4
(2.1)
P 		833.2
(2.5)
P 		252.5
(-3)
P 		286.1
(-2.7)
P 		434
(-1.3)
P 		889.7
(3)
P 		637
B 1641.3
(3)
P 		741.9
(-1.1)
P 		384.4
(-2.7)
P 		329.2
(-3)
P 		575.8
(-1.9)
P 		1214.2
(1)
P 		1312
C 1421.4
(3)
P 		684.5
(-0.8)
P 		407.6
(-2.2)
P 		258.7
(-3)
P 		528.4
(-1.6)
P 		980
(0.7)
P 		1163
avr 1286
(3) 		753.2
(-0.2) 		348.2
(-2.7) 		291.3
(-3) 		512.7
(-1.7) 		1028
(1.4) 		995
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171805_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27681
Sequence Type Exemplar sequence
Representative Public ID CEC501 NCBI
Target Description CEC501_rc /REP_DB=TREMBL Accession /GB=C07501 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk141a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076974
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000034837 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8158280:8159817:1 None
SNAP00000034834 ENSEMBL cdna:SNAP chromosome:CEL140:X:8159136:8159817:1 None
NM_076974 NCBI Caenorhabditis elegans HIstone H1 Like family member (hil-3) (hil-3) mRNA, complete cds. A 
F22F1.1 ENSEMBL cdna:known chromosome:CEL140:X:8159094:8160024:1 gene:F22F1.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8159652-8159943(+) 94.72 94.72
Public Domain and Genome References
Gene Title histone h1
Gene Symbol hil-3
Ensembl F22F1.1
Entrez Gene 181073 Entrez gene
SwissProt Q19743 EMBL-EBI
WormBase CE04443 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1631321_S_AT dm
DROSOPHILA_2:1629740_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6334 nucleosome assembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
786 nucleosome inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAM44399 Histone h1 like protein 2, isoform a [Caenorhabditis elegans] ref|NP_741417.3| HIstone H1 Like family member (hil-2) [Caenorhabditis elegans] 7.0E-37
blast AAA83282 Histone h1 like protein 3 [Caenorhabditis elegans] ref|NP_509375.1| HIstone H1 Like family member (hil-3) [Caenorhabditis elegans] sp|Q19743|H13_CAEEL Histone H1.3 (Histone H1-like protein 3) gb|AAB66471.1| histone H1.3 [Caenorhabditis elegans] 5.0E-36
blast AAA83282 Histone h1 like protein 3 [Caenorhabditis elegans] ref|NP_509375.1| HIstone H1 Like family member (hil-3) [Caenorhabditis elegans] sp|Q19743|H13_CAEEL Histone H1.3 (Histone H1-like protein 3) gb|AAB66471.1| histone H1.3 [Caenorhabditis elegans] 1.0E-35
blast AAM44399 Histone h1 like protein 2, isoform a [Caenorhabditis elegans] ref|NP_741417.3| HIstone H1 Like family member (hil-2) [Caenorhabditis elegans] 3.0E-25
blast P15796 Histone H1.2 (Histone H1-like protein 2) gb|AAB70666.1| histone H1.2 [Caenorhabditis elegans] gb|AAB70559.1| histone H1.2 [Caenorhabditis elegans] 3.0E-25
Protein Domains
Database ID Description E-Value
scop a.4.5.Histone H1/H5 All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Histone H1/H5 9.0000003502848E-15
scop a.4.5.Histone H1/H5 All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Histone H1/H5 7.00000021597487E-14
Pfam IPR005818 EMBL-EBI Histone H1/H5 1.8E-32
Pfam IPR005818 EMBL-EBI Histone H1/H5 1.8E-32
Sequence
Target Sequence 
>C. ELEGANS:171805_X_AT
aggtcaagaaggtcaagtcctccaaagaagatcgccaagcccaacccgccaagaaagttg
ccaagtctccagcaaagaagtccgctccaaagaaggcagctgctgccaagccagccaaga
aagctgttgccccaaagacataaataatcaattttnattttgttntacctcactccgatc
tcatgtctgtacatttatctctgtacttttcctccattagcccatttacttttgatgtgt
cttc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTCAAGAAGGTCAAGTCCTCCAA 661 55 42 Antisense
GTCCTCCAAAGAAGATCGCCAAGCC 673 475 58 Antisense
CAAGCCCAACCCGCCAAGAAAGTTG 576 147 77 Antisense
AGTCTCCAGCAAAGAAGTCCGCTCC 494 61 105 Antisense
GTCCGCTCCAAAGAAGGCAGCTGCT 178 475 121 Antisense
GCTGCTGCCAAGCCAGCCAAGAAAG 570 297 140 Antisense
GAAAGCTGTTGCCCCAAAGACATAA 550 359 160 Antisense
ACTCCGATCTCATGTCTGTACATTT 459 99 213 Antisense
TACATTTATCTCTGTACTTTTCCTC 319 643 231 Antisense
CCTCCATTAGCCCATTTACTTTTGA 685 265 252 Antisense
GCCCATTTACTTTTGATGTGTCTTC 414 287 261 Antisense
Sequence Source Affymetrix Proprietary Database