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[171804_x_at]

Description CEC482_rc /REP_DB=TREMBL Accession /GB=C07482 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk140f8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 02      6grp_total > 05      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3445
1 2 3 4 range
A 2704.2
(0.4)
P 		3017.2
(1)
P 		3988
(3)
P 		1004.1
(-3)
P 		2984
B 2119.2
(-0.2)
P 		2643.9
(1.2)
P 		3324.2
(3)
P 		1037.2
(-3)
P 		2287
C 3222.7
(1.1)
P 		3400.9
(1.4)
P 		4312.8
(3)
P 		868.2
(-3)
P 		3445
avr 2682
(0.5) 		3020.7
(1.2) 		3875
(3) 		969.8
(-3) 		2905

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3408
1 2 3 4 5 6 range
A 2614.8
(3)
P 		2332
(1.9)
P 		2412.7
(2.2)
P 		1098.6
(-3)
P 		2209
(1.4)
P 		1233
(-2.5)
P 		1516
B 4406.7
(3)
P 		3583.2
(1.3)
P 		1666
(-2.7)
P 		1598
(-2.8)
P 		1944.3
(-2.1)
P 		1504.9
(-3)
P 		2902
C 3176.6
(3)
P 		3017.8
(2.6)
P 		1931.7
(-0.4)
P 		1548.5
(-1.5)
P 		1736.1
(-1)
P 		999.1
(-3)
P 		2178
avr 3399.4
(3) 		2977.7
(1.8) 		2003.5
(-0.9) 		1415
(-2.5) 		1963.1
(-1) 		1245.7
(-3) 		2154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1357
1 2 3 4 range
A 984.6
(2.6)
P 		654.9
(0.4)
P 		1042.5
(3)
P 		147
(-3)
P 		896
B 675.8
(2)
P 		653
(1.7)
P 		770.3
(3)
P 		221
(-3)
P 		549
C 1066.8
(1.1)
P 		977.8
(0.7)
P 		1503.1
(3)
P 		146.4
(-3)
P 		1357
avr 909.1
(1.7) 		761.9
(0.8) 		1105.3
(3) 		171.5
(-3) 		934

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1255
1 2 3 4 5 6 range
A 482
(-0.8)
P 		829.4
(3)
P 		525.4
(-0.3)
P 		278.6
(-3)
P 		666.6
(1.2)
P 		300.2
(-2.8)
P 		551
B 1533.3
(3)
P 		1192.7
(1.2)
P 		404.6
(-3)
P 		423.3
(-2.9)
P 		789.9
(-1)
P 		561.2
(-2.2)
P 		1129
C 1177.4
(3)
P 		920.8
(1.2)
P 		491.7
(-1.8)
P 		311.4
(-3)
P 		561.8
(-1.3)
P 		334.5
(-2.8)
P 		866
avr 1064.2
(3) 		981
(2.3) 		473.9
(-1.9) 		337.8
(-3) 		672.8
(-0.2) 		398.6
(-2.5) 		726
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171804_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27842
Sequence Type Exemplar sequence
Representative Public ID CEC482 NCBI
Target Description CEC482_rc /REP_DB=TREMBL Accession /GB=C07482 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk140f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065027
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y22D7AL.10.2 ENSEMBL cdna:known chromosome:CEL140:III:1617140:1618918:-1 gene:Y22D7AL.10 None
Y22D7AL.10.1 ENSEMBL cdna:known chromosome:CEL140:III:1617159:1618924:-1 gene:Y22D7AL.10 None
SNAP00000002266 ENSEMBL cdna:SNAP chromosome:CEL140:III:1617364:1624304:-1 None
GENEFINDER00000002280 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1617364:1618911:-1 None
NM_065027 NCBI Caenorhabditis elegans Y22D7AL.10 (Y22D7AL.10) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1617207-1617431(-) 72.88 72.88
Public Domain and Genome References
Gene Title
Ensembl Y22D7AL.10
Entrez Gene 175315 Entrez gene
SwissProt Q965Q1 EMBL-EBI
WormBase CE27242 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1629790_AT dm
DROSGENOME1:148689_AT dm
CHICKEN:GGA.4873.1.S1_A_AT heat shock 10kDa protein 1 (chaperonin 10) gga
HG-U133_PLUS_2:205133_S_AT heat shock 10kDa protein 1 (chaperonin 10) hs
HG-U133A:205133_S_AT heat shock 10kDa protein 1 (chaperonin 10) hs
HG-FOCUS:205133_S_AT heat shock 10kDa protein 1 (chaperonin 10) hs
HG-U133A_2:205133_S_AT heat shock 10kDa protein 1 (chaperonin 10) hs
HUGENEFL:U07550_AT heat shock 10kDa protein 1 (chaperonin 10) hs
U133_X3P:G4504522_3P_A_AT heat shock 10kDa protein 1 (chaperonin 10) hs
HG-U95AV2:39353_AT heat shock 10kDa protein 1 (chaperonin 10) hs
HG-U95E:72985_I_AT heat shock 10kDa protein 1 (chaperonin 10) hs
HG-U95E:72987_F_AT heat shock 10kDa protein 1 (chaperonin 10) hs
MU11KSUBA:U09659_F_AT heat shock protein 1 (chaperonin 10) mm
MU11KSUBB:MSA.18466.0_F_AT heat shock protein 1 (chaperonin 10) mm
MU11KSUBB:MSA.25897.0_S_AT heat shock protein 1 (chaperonin 10) mm
MG-U74AV2:92829_AT heat shock protein 1 (chaperonin 10) mm
MOE430A:1450668_S_AT heat shock protein 1 (chaperonin 10) mm
MOUSE430A_2:1450668_S_AT heat shock protein 1 (chaperonin 10) mm
MOUSE430_2:1450668_S_AT heat shock protein 1 (chaperonin 10) mm
MOE430A:1422579_AT heat shock protein 1 (chaperonin 10) mm
MOUSE430A_2:1422579_AT heat shock protein 1 (chaperonin 10) mm
MOUSE430_2:1422579_AT heat shock protein 1 (chaperonin 10) mm
MU11KSUBB:MSA.17689.0_F_AT Heat shock protein 1 (chaperonin 10), mRNA (cDNA clone MGC:36134 IMAGE:5004427) mm
MU19KSUBC:TC39548_AT Heat shock protein 1 (chaperonin 10), mRNA (cDNA clone MGC:36134 IMAGE:5004427) mm
RN-U34:RC_AI170613_G_AT heat shock 10 kDa protein 1 rn
RG-U34A:RC_AI170613_G_AT heat shock 10 kDa protein 1 rn
RN-U34:RC_AI170613_AT heat shock 10 kDa protein 1 rn
RG-U34A:RC_AI170613_AT heat shock 10 kDa protein 1 rn
RAE230A:1386898_AT heat shock 10 kDa protein 1 rn
RAT230_2:1386898_AT heat shock 10 kDa protein 1 rn
Protein Similarities
Method ID Description E-Value
blast AAK84584 Hypothetical protein Y22D7AL.10 [Caenorhabditis elegans] ref|NP_497428.1| Y22D7AL.10 [Caenorhabditis elegans] 9.0E-54
blast CAE66432 Hypothetical protein CBG11702 [Caenorhabditis briggsae] 1.0E-52
blast AAK84584 Hypothetical protein Y22D7AL.10 [Caenorhabditis elegans] ref|NP_497428.1| Y22D7AL.10 [Caenorhabditis elegans] 7.0E-49
blast CAE66432 Hypothetical protein CBG11702 [Caenorhabditis briggsae] 7.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR001476 EMBL-EBI Chaperonin Cpn10 2.1E-42
Pfam IPR001476 EMBL-EBI Chaperonin Cpn10 2.1E-42
Sequence
Target Sequence 
>C. ELEGANS:171804_X_AT
cgagaggggagagctcgtcgcattctctgggtacccgggagatcgggcccttcccccaga
atacgggaggcaccaaggtcgtcgtcgaggacaaggaatactcaatcttccgcgagtctg
atcttctcggagtcttccattaaattatcttccatatggctttcggtctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGAGGGGAGAGCTCGTCGCATTC 376 249 15 Antisense
GCATTCTCTGGGTACCCGGGAGATC 473 305 34 Antisense
TCTCTGGGTACCCGGGAGATCGGGC 507 603 38 Antisense
TTCCCCCAGAATACGGGAGGCACCA 19 685 65 Antisense
ATACGGGAGGCACCAAGGTCGTCGT 641 19 75 Antisense
CCAAGGTCGTCGTCGAGGACAAGGA 73 269 87 Antisense
GGAATACTCAATCTTCCGCGAGTCT 618 533 109 Antisense
CTTCCGCGAGTCTGATCTTCTCGGA 372 219 121 Antisense
TGATCTTCTCGGAGTCTTCCATTAA 303 565 133 Antisense
GTCTTCCATTAAATTATCTTCCATA 212 469 146 Antisense
ATCTTCCATATGGCTTTCGGTCTCA 476 31 161 Antisense
Sequence Source Affymetrix Proprietary Database