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[171803_x_at]

Description C59983_rc /REP_DB=TREMBL Accession /GB=C59983 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk445g4 : 3prime end, single read.
Cluster 6grp_total > 49      4grp_total > 03      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 72.6
(-1.5)
A 		90.8
(0)
A 		54.1
(-3)
A 		127.2
(3)
A 		73
B 81.7
(-3)
A 		101.5
(2.6)
A 		85.2
(-2)
A 		103
(3)
A 		21
C 72.8
(-0.1)
A 		34.7
(-3)
A 		73.8
(-0)
A 		114
(3)
A 		79
avr 75.7
(-2.4) 		75.7
(-2.4) 		71
(-3) 		114.7
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 150.8
(3)
A 		119
(0)
A 		86.2
(-3)
A 		96.8
(-2)
A 		138.4
(1.8)
A 		124.9
(0.6)
A 		65
B 100.5
(-2)
A 		119.5
(0.6)
A 		93.2
(-3)
A 		116.1
(0.1)
P 		99.1
(-2.2)
A 		137.4
(3)
P 		44
C 79.9
(-1.1)
A 		120.4
(1.6)
M 		50.5
(-3)
A 		91.4
(-0.3)
A 		86
(-0.7)
A 		142.6
(3)
P 		92
avr 110.4
(0.5) 		119.6
(1.4) 		76.6
(-3) 		101.4
(-0.5) 		107.8
(0.2) 		135
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 26.4
(3)
A 		19.7
(-0.3)
A 		14.1
(-3)
A 		18.6
(-0.8)
A 		12
B 26.1
(3)
A 		25.1
(2.1)
A 		19.7
(-3)
A 		22
(-0.8)
A 		6
C 24.1
(2.4)
A 		10
(-3)
A 		25.7
(3)
A 		19.2
(0.5)
A 		16
avr 25.5
(3) 		18.3
(-3) 		19.8
(-1.8) 		19.9
(-1.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 27.8
(-0.7)
A 		42.3
(3)
A 		18.8
(-3)
A 		24.6
(-1.5)
A 		41.8
(2.9)
A 		30.4
(-0)
A 		24
B 35
(-0.4)
A 		39.8
(0.6)
A 		22.6
(-3)
A 		30.8
(-1.3)
P 		40.3
(0.7)
A 		51.2
(3)
P 		29
C 29.6
(-0.1)
A 		36.7
(1.1)
M 		12.9
(-3)
A 		18.4
(-2.1)
A 		27.8
(-0.4)
A 		47.7
(3)
P 		35
avr 30.8
(0) 		39.6
(2.2) 		18.1
(-3) 		24.6
(-1.4) 		36.6
(1.4) 		43.1
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171803_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27664
Sequence Type Exemplar sequence
Representative Public ID C59983 NCBI
Target Description C59983_rc /REP_DB=TREMBL Accession /GB=C59983 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk445g4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C59983
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C59983 C59983_rc /REP_DB=TREMBL Accession /GB=C59983 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk445g4 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066447 6/11 Cross Hyb Matching Probes A 
SNAP00000035981 5/11 Cross Hyb Matching Probes None
GENEFINDER00000035984 5/11 Cross Hyb Matching Probes None
R05D3.11 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8380397-8380566(+) 53.33 53.33
Sequence
Target Sequence 
>C. ELEGANS:171803_X_AT
gaaaatacgtgaaagccggcgatgagctaacctgggactatcaatatactcaagatcaga
cggataccacacaactcacatgccactgcggagctgaaaactgcaccggccgtttgctga
aaagttaaagaattgttgttatttccttcccnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnttatattangcagagatttgtcatattngatcaatcgtgggaaatatcccct
ctgaggaccagcatgcgtgtcataggc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATACGTGAAAGCCGGCGATGA 91 353 31 Antisense
AGCCGGCGATGAGCTAACCTGGGAC 664 81 44 Antisense
AACCTGGGACTATCAATATACTCAA 339 145 59 Antisense
ATCAGACGGATACCACACAACTCAC 306 29 85 Antisense
TCACATGCCACTGCGGAGCTGAAAA 577 627 106 Antisense
TGCGGAGCTGAAAACTGCACCGGCC 278 581 117 Antisense
TGCACCGGCCGTTTGCTGAAAAGTT 536 575 132 Antisense
CAATCGTGGGAAATATCCCCTCTGA 481 179 250 Antisense
GAAATATCCCCTCTGAGGACCAGCA 97 361 259 Antisense
CCTCTGAGGACCAGCATGCGTGTCA 621 267 268 Antisense
GAGGACCAGCATGCGTGTCATAGGC 617 403 273 Antisense
Sequence Source Affymetrix Proprietary Database