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[171801_s_at]

Description C61547 /REP_DB=TREMBL Accession /GB=C61547 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk240d1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 16      4grp_highest_8_8 > 63      4grp_high_8_8 > 28      6grp_highest_nonorm > 31      6grp_total > 15      4grp_total > 36      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 292
1 2 3 4 range
A 781.2
(3)
P 		748.4
(2.2)
P 		544.1
(-3)
P 		641
(-0.5)
P 		237
B 658.9
(-1)
P 		836.5
(3)
P 		570.9
(-3)
P 		774.6
(1.6)
P 		266
C 759.2
(1.8)
P 		795.6
(2.7)
P 		583.8
(-3)
P 		805.3
(3)
P 		222
avr 733.1
(1.4) 		793.5
(3) 		566.3
(-3) 		740.3
(1.6) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 585
1 2 3 4 5 6 range
A 1284.4
(3)
P 		1058.4
(0.7)
P 		790
(-2.1)
P 		756.8
(-2.4)
P 		823.5
(-1.7)
P 		699.3
(-3)
P 		585
B 1270.6
(3)
P 		1164.3
(1.8)
P 		946.7
(-0.7)
P 		982.1
(-0.3)
P 		738.4
(-3)
P 		782.8
(-2.5)
P 		532
C 976.7
(2.2)
P 		1016.4
(3)
P 		974.6
(2.2)
P 		748.8
(-2.4)
P 		719.4
(-3)
P 		764.9
(-2.1)
P 		297
avr 1177.2
(3) 		1079.7
(1.6) 		903.8
(-0.8) 		829.2
(-1.9) 		760.4
(-2.8) 		749
(-3) 		428
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 284.4
(3)
P 		162.5
(-0.8)
P 		142.2
(-1.5)
P 		93.8
(-3)
P 		191
B 210.1
(3)
P 		206.6
(2.7)
P 		132.3
(-3)
P 		165.1
(-0.5)
P 		78
C 251.3
(3)
P 		228.7
(1.8)
P 		203.5
(0.5)
P 		135.8
(-3)
P 		116
avr 248.6
(3) 		199.3
(0.5) 		159.3
(-1.6) 		131.6
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 236.8
(-1.1)
P 		376.4
(3)
P 		172
(-3)
P 		191.9
(-2.4)
P 		248.5
(-0.7)
P 		170.3
(-3)
P 		206
B 442.1
(3)
P 		387.6
(1.5)
P 		229.9
(-3)
P 		260.1
(-2.1)
P 		300
(-1)
P 		291.9
(-1.2)
P 		212
C 362
(3)
P 		310.1
(1.5)
P 		248.1
(-0.2)
P 		150.6
(-3)
P 		232.8
(-0.7)
P 		256.1
(-0)
P 		211
avr 347
(2.6) 		358
(3) 		216.7
(-2.4) 		200.9
(-3) 		260.4
(-0.7) 		239.4
(-1.5) 		157
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171801_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27715
Sequence Type Exemplar sequence
Representative Public ID C61547 NCBI
Target Description C61547 /REP_DB=TREMBL Accession /GB=C61547 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk240d1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077618(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077618 NCBI Caenorhabditis elegans W03G11.4 (W03G11.4) mRNA, complete cds. 10/10 None
W03G11.4.1 ENSEMBL cdna:known chromosome:CEL140:X:12076413:12080193:-1 gene:W03G11.4 10/10 A 
W03G11.4.2 ENSEMBL cdna:known chromosome:CEL140:X:12076474:12093004:-1 gene:W03G11.4 10/10 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12076422-12076805(-) 83.55 83.55
Public Domain and Genome References
Gene Title
Ensembl W03G11.4
Entrez Gene 181377 Entrez gene
SwissProt Q18002 EMBL-EBI
WormBase CE18331 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91547 Hypothetical protein W03G11.4 [Caenorhabditis elegans] emb|CAA91533.1| Hypothetical protein W03G11.4 [Caenorhabditis elegans] ref|NP_510019.1| W03G11.4 [Caenorhabditis elegans] 0.0
blast CAE69871 Hypothetical protein CBG16205 [Caenorhabditis briggsae] 1.0E-108
Sequence
Target Sequence 
>C. ELEGANS:171801_S_AT
tcttgctcaaggccaacgttgccattatggatgccattttgaccatccaaaagttcttat
tcactgccacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTGCTCAAGGCCAACGTTGCCAT 561 617 150 Antisense
CTTGCTCAAGGCCAACGTTGCCATT 209 217 151 Antisense
TTGCTCAAGGCCAACGTTGCCATTA 596 701 152 Antisense
TGCTCAAGGCCAACGTTGCCATTAT 232 579 153 Antisense
GCTCAAGGCCAACGTTGCCATTATG 339 301 154 Antisense
CTCAAGGCCAACGTTGCCATTATGG 378 227 155 Antisense
GATGCCATTTTGACCATCCAAAAGT 532 413 179 Antisense
ATGCCATTTTGACCATCCAAAAGTT 233 41 180 Antisense
TGCCATTTTGACCATCCAAAAGTTC 478 585 181 Antisense
CAAAAGTTCTTATTCACTGCCACGT 249 191 197 Antisense
Sequence Source Affymetrix Proprietary Database