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[171800_x_at] 60S ribosomal protein L19

Description C67095 /REP_DB=TREMBL Accession /GB=C67095 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk253d5 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 43      4grp_total > 17      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21555
1 2 3 4 range
A 28035.3
(-3)
P 		39254.9
(0.2)
P 		33953
(-1.3)
P 		48888.3
(3)
P 		20853
B 29466.8
(-3)
P 		32035.1
(-1.3)
P 		35249.1
(0.8)
P 		38543.3
(3)
P 		9077
C 27333.5
(-3)
P 		30216.2
(-2.1)
P 		28286.8
(-2.7)
P 		46307.1
(3)
P 		18974
avr 28278.5
(-3) 		33835.4
(-1) 		32496.3
(-1.4) 		44579.6
(3) 		16301

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8170
1 2 3 4 5 6 range
A 27183.3
(1.3)
P 		24403.9
(-1.2)
P 		29050.6
(3)
P 		24814.5
(-0.8)
P 		22421
(-3)
P 		24509.1
(-1.1)
P 		6630
B 25198.1
(-0.6)
P 		24755
(-0.9)
P 		30062.7
(3)
P 		22670.9
(-2.4)
P 		21902.4
(-3)
P 		22223.7
(-2.8)
P 		8160
C 21893
(-3)
P 		26571.2
(3)
P 		26093.4
(2.4)
P 		25607.8
(1.8)
P 		22475.6
(-2.3)
P 		23666.4
(-0.7)
P 		4678
avr 24758.1
(-0.6) 		25243.4
(-0.1) 		28402.2
(3) 		24364.4
(-0.9) 		22266.3
(-3) 		23466.4
(-1.8) 		6136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3051
1 2 3 4 range
A 10207.7
(3)
P 		8521.2
(-0.3)
P 		8876
(0.4)
P 		7156.3
(-3)
P 		3051
B 9396.7
(3)
P 		7911.9
(-3)
P 		8168
(-2)
P 		8213.6
(-1.8)
P 		1485
C 9048.2
(0.6)
P 		8687.3
(-0.4)
P 		9858.8
(3)
P 		7808.1
(-3)
P 		2051
avr 9550.9
(3) 		8373.5
(-0.9) 		8967.6
(1.1) 		7726
(-3) 		1825

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3888
1 2 3 4 5 6 range
A 5011
(-3)
P 		8679.2
(3)
P 		6326.6
(-0.8)
P 		6293.5
(-0.9)
P 		6765.7
(-0.1)
P 		5967.2
(-1.4)
P 		3668
B 8767.7
(2.7)
P 		8239.9
(1.6)
P 		7300.1
(-0.3)
P 		6004.7
(-3)
P 		8898.7
(3)
P 		8287.1
(1.7)
P 		2894
C 8114.8
(3)
P 		8107.7
(3)
P 		6641.2
(0)
P 		5149.8
(-3)
P 		7272.8
(1.3)
P 		7922.5
(2.6)
P 		2965
avr 7297.8
(0.5) 		8342.3
(3) 		6756
(-0.8) 		5816
(-3) 		7645.7
(1.3) 		7392.3
(0.7) 		2526
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171800_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27736
Sequence Type Exemplar sequence
Representative Public ID C67095 NCBI
Target Description C67095 /REP_DB=TREMBL Accession /GB=C67095 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk253d5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059207(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059207 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-19) (rpl-19) mRNA, complete cds. 10/11 A 
SNAP00000041666 ENSEMBL cdna:SNAP chromosome:CEL140:I:5480214:5486516:-1 9/11 None
GENEFINDER00000041674 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5484833:5488161:-1 9/11 None
C09D4.5.2 ENSEMBL cdna:known chromosome:CEL140:I:5484782:5485745:-1 gene:C09D4.5 10/11 A 
C09D4.5.1 ENSEMBL cdna:known chromosome:CEL140:I:5484782:5485752:-1 gene:C09D4.5 10/11 A 
C09D4.5.4 ENSEMBL cdna:known chromosome:CEL140:I:5484782:5486058:-1 gene:C09D4.5 10/11 A 
C09D4.5.3 ENSEMBL cdna:known chromosome:CEL140:I:5484782:5485787:-1 gene:C09D4.5 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5484781-5485249(-) 94.83 94.83
Public Domain and Genome References
Gene Title 60S ribosomal protein L19
Gene Symbol rpl-19
Ensembl C09D4.5
Entrez Gene 172201 Entrez gene
SwissProt O02639 EMBL-EBI
WormBase CE08034 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258410_AT 60S ribosomal protein L19 (RPL19B) at
CANINE:1603629_X_AT Ribosomal protein L19 cfa
CANINE:1602213_AT Ribosomal protein L19 cfa
CANINE:1586981_AT Ribosomal protein L19 cfa
CANINE:1586056_AT Ribosomal protein L19 cfa
CANINE:1583129_S_AT Ribosomal protein L19 cfa
CANINE_2:CFA.3256.1.A1_A_AT Ribosomal protein L19 cfa
CANINE_2:CFA.3256.1.A1_S_AT Ribosomal protein L19 cfa
DROSOPHILA_2:1630455_AT Ribosomal protein L19 dm
DROSGENOME1:153876_AT Ribosomal protein L19 dm
CHICKEN:GGAAFFX.12179.1.S1_AT ribosomal protein L19 gga
CHICKEN:GGAAFFX.12179.1.S1_S_AT ribosomal protein L19 gga
PLASMODIUM_ANOPHELES:200029_AT ribosomal protein L19 hs
HG-U133_PLUS_2:200029_AT ribosomal protein L19 hs
HG-FOCUS:200029_AT ribosomal protein L19 hs
HG-U133A:200029_AT ribosomal protein L19 hs
HG-U133B:200029_AT ribosomal protein L19 hs
HG-U133A_2:200029_AT ribosomal protein L19 hs
U133_X3P:200029_AT ribosomal protein L19 hs
HG-U95AV2:32435_AT ribosomal protein L19 hs
HU35KSUBC:RC_N34961_AT ribosomal protein L19 hs
HUGENEFL:X63527_AT ribosomal protein L19 hs
U133_X3P:G4506608_3P_AT ribosomal protein L19 hs
U133_X3P:HS.296743.0.S1_3P_A_AT ribosomal protein L19 hs
HG-U95C:62293_AT ribosomal protein L19 hs
MG-U74AV2:161961_AT ribosomal protein L19 mm
MU11KSUBA:M62952_F_AT ribosomal protein L19 mm
MG-U74AV2:97483_AT ribosomal protein L19 mm
MOE430A:1416219_AT ribosomal protein L19 mm
MOUSE430A_2:1416219_AT ribosomal protein L19 mm
MOUSE430_2:1416219_AT ribosomal protein L19 mm
MOE430B:1445575_AT Ribosomal protein L19, mRNA (cDNA clone MGC:6500 IMAGE:2648593) mm
MOUSE430_2:1445575_AT Ribosomal protein L19, mRNA (cDNA clone MGC:6500 IMAGE:2648593) mm
MU19KSUBA:TC15665_F_AT Ribosomal protein L19, mRNA (cDNA clone MGC:6500 IMAGE:2648593) mm
MU19KSUBA:TC15666_AT Ribosomal protein L19, mRNA (cDNA clone MGC:6500 IMAGE:2648593) mm
RG-U34A:RC_AA800054_AT ribosomal protein L19 rn
RAE230A:1367610_AT ribosomal protein L19 rn
RAT230_2:1367610_AT ribosomal protein L19 rn
YEAST_2:1769765_AT Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl19Bp and has similarity to rat L19 ribosomal protein; rpl19a and rpl19b single null mutations result in slow growth, while the double null mutation is lethal Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAP68955 Hypothetical protein C09D4.4a [Caenorhabditis elegans] ref|NP_491607.2| C09D4.4a [Caenorhabditis elegans] 0.0
blast AAP68956 Hypothetical protein C09D4.4b [Caenorhabditis elegans] ref|NP_491606.2| C09D4.4b [Caenorhabditis elegans] 0.0
blast AAP68957 Hypothetical protein C09D4.4c [Caenorhabditis elegans] ref|NP_491605.2| C09D4.4c [Caenorhabditis elegans] 0.0
blast AAB53979 Ribosomal protein, large subunit protein 19 [Caenorhabditis elegans] ref|NP_491608.1| Ribosomal Protein, Large subunit family member (rpl-19) [Caenorhabditis elegans] sp|O02639|RL19_CAEEL 60S ribosomal protein L19 4.0E-73
blast CAE67070 Hypothetical protein CBG12479 [Caenorhabditis briggsae] 2.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR000196 EMBL-EBI Ribosomal protein L19e 6.6E-91
Pfam IPR000196 EMBL-EBI Ribosomal protein L19e 2.1E-90
Pfam IPR007751 EMBL-EBI Protein of unknown function DUF676 1.8E-96
Pfam IPR000196 EMBL-EBI Ribosomal protein L19e 1.2E-84
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000041674 1 69-91
Sequence
Target Sequence 
>C. ELEGANS:171800_X_AT
atgcgtgtcctcagaaaccttctgagaagatacagagatgccaagaagttggacaagcac
ctttaccacgagctctaccttcgcgcaaagggaaacaacttcaagaacaagaagaatctc
atcgagtacatcttcaagaagaagactgagaacaagagagccaagcaacttgctgaccaa
gctcaagccagacgtgacaagaacaaggagagccgcaagcgccgtgaggagagacaagtc
gtcaagcgtgctgagcttctcagaacaatttcccagagccgggtgggtttcgcgcgaaag
taaaactttgttgttttcctctataatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGTGTCCTCAGAAACCTTCTGA 701 41 35 Antisense
GTTGGACAAGCACCTTTACCACGAG 170 437 82 Antisense
AGCTCTACCTTCGCGCAAAGGGAAA 364 77 105 Antisense
GAATCTCATCGAGTACATCTTCAAG 328 329 148 Antisense
GAGAGCCAAGCAACTTGCTGACCAA 193 395 190 Antisense
TGCTGACCAAGCTCAAGCCAGACGT 104 581 205 Antisense
AACAAGGAGAGCCGCAAGCGCCGTG 600 133 236 Antisense
GCGCCGTGAGGAGAGACAAGTCGTC 167 287 253 Antisense
AGTCGTCAAGCGTGCTGAGCTTCTC 565 61 271 Antisense
CTCAGAACAATTTCCCAGAGCCGGG 507 225 293 Antisense
AACTTTGTTGTTTTCCTCTATAATG 687 137 338 Antisense
Sequence Source Affymetrix Proprietary Database