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[171799_x_at]

Description C69356 /REP_DB=TREMBL Accession /GB=C69356 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk362c7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 42      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 27      6grp_total > 53      4grp_total > 0      6grp_highest_sub > 03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4425
1 2 3 4 range
A 7120
(-2.4)
P 		7583.1
(-0.8)
P 		8692.7
(3)
P 		6936.9
(-3)
P 		1756
B 7548
(-1.4)
P 		6397.6
(-3)
P 		7211.1
(-1.9)
P 		10818
(3)
P 		4420
C 6578
(-2.7)
P 		6392.8
(-3)
P 		7843.1
(-0.4)
P 		9713.7
(3)
P 		3321
avr 7082
(-2.3) 		6791.2
(-3) 		7915.6
(-0.1) 		9156.2
(3) 		2365

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2929
1 2 3 4 5 6 range
A 5657.6
(-3)
P 		7138.9
(1.5)
P 		7366.7
(2.2)
P 		7636.3
(3)
P 		6372.1
(-0.8)
P 		6156.3
(-1.5)
P 		1979
B 6592.9
(-1.1)
P 		7938.2
(1.7)
P 		8586.1
(3)
P 		6757.1
(-0.8)
P 		7108.2
(-0.1)
P 		5703.4
(-3)
P 		2883
C 7591.4
(0.9)
P 		7363.1
(0.5)
P 		8550.7
(3)
P 		5756
(-3)
P 		8043.2
(1.9)
P 		7069.1
(-0.2)
P 		2795
avr 6614
(-2) 		7480.1
(0.8) 		8167.8
(3) 		6716.5
(-1.7) 		7174.5
(-0.2) 		6309.6
(-3) 		1858
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1718
1 2 3 4 range
A 2592.4
(3)
P 		1646.1
(-0.6)
P 		2272.4
(1.8)
P 		1015.4
(-3)
P 		1577
B 2407
(3)
P 		1580.1
(-3)
P 		1671
(-2.3)
P 		2305.3
(2.3)
P 		827
C 2177.5
(-0)
P 		1838
(-1.9)
P 		2733.6
(3)
P 		1637.9
(-3)
P 		1096
avr 2392.3
(3) 		1688.1
(-2.7) 		2225.7
(1.6) 		1652.9
(-3) 		739

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1845
1 2 3 4 5 6 range
A 1042.9
(-3)
P 		2538.9
(3)
P 		1604.3
(-0.7)
P 		1936.7
(0.6)
P 		1922.8
(0.5)
P 		1498.9
(-1.2)
P 		1496
B 2294
(-0.2)
P 		2642.3
(1.7)
P 		2085
(-1.4)
P 		1789.7
(-3)
P 		2888
(3)
P 		2126.8
(-1.2)
P 		1098
C 2813.8
(3)
P 		2246.7
(0.9)
P 		2176.3
(0.7)
P 		1157.5
(-3)
P 		2602.7
(2.2)
P 		2366.4
(1.4)
P 		1656
avr 2050.2
(-0) 		2476
(3) 		1955.2
(-0.7) 		1628
(-3) 		2471.2
(3) 		1997.4
(-0.4) 		848
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171799_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27980
Sequence Type Exemplar sequence
Representative Public ID C69356 NCBI
Target Description C69356 /REP_DB=TREMBL Accession /GB=C69356 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk362c7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059982(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059982 NCBI Caenorhabditis elegans F36A2.7 (F36A2.7) mRNA, complete cds. 9/11 A 
SNAP00000004923 ENSEMBL cdna:SNAP chromosome:CEL140:I:8821887:8823009:1 9/11 None
GENEFINDER00000004937 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8821887:8823009:1 9/11 None
F36A2.7.1 ENSEMBL cdna:known chromosome:CEL140:I:8821884:8823322:1 gene:F36A2.7 9/11 None
F36A2.7.2 ENSEMBL cdna:known chromosome:CEL140:I:8821886:8823322:1 gene:F36A2.7 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8822663-8823035(+) 85.75 85.75
Public Domain and Genome References
Gene Title
Ensembl F36A2.7
Entrez Gene 172692 Entrez gene
SwissProt P90860 EMBL-EBI
WormBase CE09946 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03069 Hypothetical protein F36A2.7 [Caenorhabditis elegans] ref|NP_492383.1| F36A2.7 [Caenorhabditis elegans] 1.0E-94
blast CAB03069 Hypothetical protein F36A2.7 [Caenorhabditis elegans] ref|NP_492383.1| F36A2.7 [Caenorhabditis elegans] 2.0E-86
blast CAE66979 Hypothetical protein CBG12375 [Caenorhabditis briggsae] 2.0E-85
blast CAE66979 Hypothetical protein CBG12375 [Caenorhabditis briggsae] 6.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492383.1 1 82-104
F36A2.7.1 1 82-104
F36A2.7.2 1 82-104
SNAP00000004923 1 71-93
GENEFINDER00000004937 1 82-104
Sequence
Target Sequence 
>C. ELEGANS:171799_X_AT
tgcgtccttttcggatacactgtatggtattctttcgagaaggccgaaatctggcttgac
agaagccacacagttgctccatgggactgggaaagaattcgcaacaattactggaagaaa
ccaactttggtctttgacccaactggagtcacccaccaaagactcgagatcttggaaact
cttcaagacgagatggtgcgccgccgccaaggagagaggaaccagataaatcagctacat
gtttgctagtgattccccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGTCCTTTTCGGATACACTGTAT 639 583 54 Antisense
ACACTGTATGGTATTCTTTCGAGAA 165 111 70 Antisense
GAGAAGGCCGAAATCTGGCTTGACA 696 389 90 Antisense
CAGAAGCCACACAGTTGCTCCATGG 227 205 113 Antisense
CCAACTTTGGTCTTTGACCCAACTG 65 269 174 Antisense
CTTTGACCCAACTGGAGTCACCCAC 407 221 185 Antisense
GTCACCCACCAAAGACTCGAGATCT 610 465 201 Antisense
GACTCGAGATCTTGGAAACTCTTCA 622 373 214 Antisense
CTTCAAGACGAGATGGTGCGCCGCC 441 219 234 Antisense
CGCCGCCGCCAAGGAGAGAGGAACC 335 257 252 Antisense
CTACATGTTTGCTAGTGATTCCCCC 111 227 288 Antisense
Sequence Source Affymetrix Proprietary Database