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[171798_x_at] Eukaryotic ribosomal protein L18

Description C70457 /REP_DB=TREMBL Accession /GB=C70457 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk409a4 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 21      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 19      6grp_total > 33      4grp_total > 17      6grp_cgc > 70      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17273
1 2 3 4 range
A 26185.1
(-3)
P 		34467.4
(0.1)
P 		31375.5
(-1.1)
P 		42191.5
(3)
P 		16006
B 27012.1
(-3)
P 		30010.5
(-0.7)
P 		32757.2
(1.4)
P 		34850.1
(3)
P 		7838
C 24918.9
(-3)
P 		27473.6
(-1.9)
P 		25865.8
(-2.6)
P 		38292
(3)
P 		13373
avr 26038.7
(-3) 		30650.5
(-0.8) 		29999.5
(-1.1) 		38444.5
(3) 		12406

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11033
1 2 3 4 5 6 range
A 24722.3
(3)
P 		23065.2
(1.5)
P 		23386.1
(1.8)
P 		22309.1
(0.9)
P 		17954.4
(-3)
P 		21937.8
(0.5)
P 		6768
B 22439.2
(2)
P 		20640.2
(0.6)
P 		23827.8
(3)
P 		18767.2
(-0.7)
P 		16882
(-2.1)
P 		15689.5
(-3)
P 		8138
C 21444.2
(0.9)
P 		20118.2
(0.2)
P 		25238.7
(3)
P 		20250
(0.3)
P 		21907.3
(1.2)
P 		14206.2
(-3)
P 		11033
avr 22868.6
(1.9) 		21274.5
(0.5) 		24150.9
(3) 		20442.1
(-0.2) 		18914.6
(-1.6) 		17277.8
(-3) 		6873
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3358
1 2 3 4 range
A 9534
(3)
P 		7482
(-0.7)
P 		8202.2
(0.6)
P 		6176
(-3)
P 		3358
B 8613.9
(3)
P 		7411.9
(-3)
P 		7590.6
(-2.1)
P 		7426.6
(-2.9)
P 		1202
C 8248.9
(1.2)
P 		7898.8
(0.4)
P 		9015
(3)
P 		6456.6
(-3)
P 		2558
avr 8798.9
(3) 		7597.6
(-0.4) 		8269.3
(1.5) 		6686.4
(-3) 		2113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4131
1 2 3 4 5 6 range
A 4557.4
(-3)
P 		8203.1
(3)
P 		5093
(-2.1)
P 		5658.1
(-1.2)
P 		5417.9
(-1.6)
P 		5341.2
(-1.7)
P 		3646
B 7807.7
(3)
P 		6870.3
(1)
P 		5786.1
(-1.3)
P 		4970.8
(-3)
P 		6858.9
(1)
P 		5850.5
(-1.1)
P 		2837
C 7948.4
(3)
P 		6138.7
(0.2)
P 		6423.7
(0.6)
P 		4072.3
(-3)
P 		7088.9
(1.7)
P 		4755.6
(-1.9)
P 		3876
avr 6771.2
(2.2) 		7070.7
(3) 		5767.6
(-0.6) 		4900.4
(-3) 		6455.2
(1.3) 		5315.8
(-1.9) 		2170
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171798_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28077
Sequence Type Exemplar sequence
Representative Public ID C70457 NCBI
Target Description C70457 /REP_DB=TREMBL Accession /GB=C70457 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk409a4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070254(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070254 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-18) (rpl-18) mRNA, complete cds. 9/11 A 
Y45F10D.12.3 ENSEMBL cdna:known chromosome:CEL140:IV:13777827:13778783:1 gene:Y45F10D.12 9/11 None
Y45F10D.12.1 ENSEMBL cdna:known chromosome:CEL140:IV:13777827:13778783:1 gene:Y45F10D.12 9/11 None
Y45F10D.12.2 ENSEMBL cdna:known chromosome:CEL140:IV:13777834:13778783:1 gene:Y45F10D.12 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025704 8/11 Cross Hyb Matching Probes None
GENEFINDER00000025732 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13778219-13778782(+) 89.56 89.56
Public Domain and Genome References
Gene Title Eukaryotic ribosomal protein L18
Gene Symbol rpl-18
Ensembl Y45F10D.12
Entrez Gene 178342 Entrez gene
SwissProt O45946 EMBL-EBI
WormBase CE16650 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246758_AT 60S ribosomal protein L18 (RPL18C) at
DROSOPHILA_2:1629400_AT Ribosomal protein L18 dm
DROSGENOME1:148318_AT Ribosomal protein L18 dm
PLASMODIUM_ANOPHELES:200022_AT ribosomal protein L18 hs
HG-U133_PLUS_2:200022_AT ribosomal protein L18 hs
HG-FOCUS:200022_AT ribosomal protein L18 hs
HG-U133A:200022_AT ribosomal protein L18 hs
HG-U133B:200022_AT ribosomal protein L18 hs
HG-U133A_2:200022_AT ribosomal protein L18 hs
U133_X3P:200022_AT ribosomal protein L18 hs
HUGENEFL:L11566_AT ribosomal protein L18 hs
U133_X3P:G4506606_3P_AT ribosomal protein L18 hs
HG-U95AV2:31546_AT ribosomal protein L18 hs
U133_X3P:HS.75458.2.S1_3P_X_AT Ribosomal protein L18 hs
U133_X3P:HS.75458.2.S1_3P_AT Ribosomal protein L18 hs
HG-U133A_2:214335_AT Ribosomal protein L18 hs
HG-U133_PLUS_2:214335_AT Ribosomal protein L18 hs
HG-U133A:214335_AT Ribosomal protein L18 hs
HG-U133A_2:222297_X_AT Ribosomal protein L18 hs
HG-U133_PLUS_2:222297_X_AT Ribosomal protein L18 hs
HG-U133A:222297_X_AT Ribosomal protein L18 hs
U133_X3P:HS.317387.0.S1_3P_X_AT Ribosomal protein L18 hs
MOUSE430A_2:1450372_A_AT ribosomal protein L18 mm
MOUSE430_2:1450372_A_AT ribosomal protein L18 mm
MOE430A:1450372_A_AT ribosomal protein L18 mm
MOUSE430_2:1456447_AT ribosomal protein L18 mm
MOUSE430A_2:1456447_AT ribosomal protein L18 mm
MOE430A:1456447_AT ribosomal protein L18 mm
MOE430A:1436699_X_AT ribosomal protein L18 mm
MOUSE430A_2:1436699_X_AT ribosomal protein L18 mm
MOUSE430_2:1436699_X_AT ribosomal protein L18 mm
MU11KSUBA:L04128_F_AT ribosomal protein L18 mm
MU11KSUBA:L04128_R_AT ribosomal protein L18 mm
MG-U74AV2:160476_F_AT ribosomal protein L18 mm
MOE430A:1437005_A_AT ribosomal protein L18 mm
MOUSE430A_2:1437005_A_AT ribosomal protein L18 mm
MOUSE430_2:1437005_A_AT ribosomal protein L18 mm
MU19KSUBA:TC14238_F_AT Ribosomal protein L18 (Rpl18), mRNA mm
RG-U34A:M20156_AT ribosomal protein L18 rn
RAE230A:1367623_AT ribosomal protein L18 rn
RAT230_2:1367623_AT ribosomal protein L18 rn
YEAST_2:1771055_AT Protein component of the large (60S) ribosomal subunit, identical to Rpl18Ap and has similarity to rat L18 ribosomal protein Sc
YEAST_2:1778798_S_AT Protein component of the large (60S) ribosomal subunit, identical to Rpl18Ap and has similarity to rat L18 ribosomal protein Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16387 Hypothetical protein Y45F10D.12 [Caenorhabditis elegans] ref|NP_502655.1| Ribosomal Protein, Large subunit family member (rpl-18) [Caenorhabditis elegans] 1.0E-101
blast CAE74591 Hypothetical protein CBG22372 [Caenorhabditis briggsae] 3.0E-96
blast AAN73382 ribosomal protein L18 [Petromyzon marinus] 2.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR000039 EMBL-EBI Ribosomal protein L18e 1.7E-104
Sequence
Target Sequence 
>C. ELEGANS:171798_X_AT
gtttctacactgtcccaaagatctccgtcgccgctcttcacgtcaccgaaggagcccgcg
ccagaatccttgctgccggaggagaaatcatcaccctcgaccagctcgccctcaagtcgc
caaagggagaaaacaccgtcttcctccagggaccacgatctgctcgtgaagccgagaagc
acttcggaccagctccaggagtcccacactcccacacctagccatacgtcagatcaaagg
gacgcaagttcgagcgcgcccgcggacgcagagcttccagagcctacaagaactaagttg
ttgttattttgttcccatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCTACACTGTCCCAAAGATCTC 664 449 37 Antisense
GCTCTTCACGTCACCGAAGGAGCCC 309 301 69 Antisense
CAGAATCCTTGCTGCCGGAGGAGAA 277 205 98 Antisense
GAGGAGAAATCATCACCCTCGACCA 671 403 115 Antisense
CTCGCCCTCAAGTCGCCAAAGGGAG 663 231 141 Antisense
GGGACCACGATCTGCTCGTGAAGCC 58 495 185 Antisense
CCGAGAAGCACTTCGGACCAGCTCC 421 263 208 Antisense
ACACCTAGCCATACGTCAGATCAAA 449 109 250 Antisense
AAAGGGACGCAAGTTCGAGCGCGCC 14 123 272 Antisense
CGCAGAGCTTCCAGAGCCTACAAGA 282 255 303 Antisense
GTTGTTGTTATTTTGTTCCCATGAT 108 437 333 Antisense
Sequence Source Affymetrix Proprietary Database