[Home] | [Total List]

[171796_x_at]

Description C48780 /REP_DB=TREMBL Accession /GB=C48780 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk461b7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 43      4grp_high_8_8 > 46      6grp_highest_nonorm > 43      6grp_total > 10      4grp_total > 49      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2287
1 2 3 4 range
A 36
(-3)
A 		2303.2
(3)
P 		2014.7
(2.2)
P 		104.1
(-2.8)
P 		2267
B 16.3
(-3)
A 		1989.4
(2.4)
P 		2220.7
(3)
P 		189.8
(-2.5)
P 		2204
C 43.6
(-3)
P 		2276.2
(3)
P 		1945.6
(2.1)
P 		36.1
(-3)
P 		2240
avr 32
(-3) 		2189.6
(3) 		2060.3
(2.6) 		110
(-2.8) 		2158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1667
1 2 3 4 5 6 range
A 261
(-3)
P 		1671.7
(3)
P 		1097
(0.6)
P 		776.7
(-0.8)
P 		1004.8
(0.2)
P 		553.1
(-1.8)
P 		1411
B 226.5
(-3)
P 		1702.6
(3)
P 		1236.5
(1.1)
P 		984.8
(0.1)
P 		1196.9
(0.9)
P 		779.6
(-0.8)
P 		1476
C 389
(-3)
P 		1893.3
(3)
P 		963.4
(-0.7)
P 		686.9
(-1.8)
P 		1167.1
(0.1)
P 		629.5
(-2)
P 		1504
avr 292.2
(-3) 		1755.9
(3) 		1099
(0.3) 		816.1
(-0.9) 		1122.9
(0.4) 		654.1
(-1.5) 		1464
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 673
1 2 3 4 range
A 13.1
(-3)
A 		500
(2.7)
P 		526.7
(3)
P 		15.2
(-3)
P 		514
B 5.2
(-3)
A 		491.3
(2.7)
P 		514.6
(3)
P 		40.5
(-2.6)
P 		509
C 14.4
(-2.9)
P 		654.4
(2.8)
P 		678.1
(3)
P 		6.1
(-3)
P 		672
avr 10.9
(-3) 		548.6
(2.7) 		573.1
(3) 		20.6
(-2.9) 		562

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 546
1 2 3 4 5 6 range
A 48.1
(-3)
P 		594.5
(3)
P 		238.9
(-0.9)
P 		197
(-1.4)
P 		303.2
(-0.2)
P 		134.7
(-2)
P 		546
B 78.8
(-3)
P 		566.7
(3)
P 		300.2
(-0.3)
P 		260.9
(-0.8)
P 		486.3
(2)
P 		290.7
(-0.4)
P 		488
C 144.2
(-2.9)
P 		577.7
(3)
P 		245.2
(-1.5)
P 		138.1
(-3)
P 		377.7
(0.3)
P 		210.7
(-2)
P 		440
avr 90.4
(-3) 		579.6
(3) 		261.4
(-0.9) 		198.7
(-1.7) 		389.1
(0.7) 		212
(-1.5) 		489
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171796_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27597
Sequence Type Exemplar sequence
Representative Public ID C48780 NCBI
Target Description C48780 /REP_DB=TREMBL Accession /GB=C48780 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk461b7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071919(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071919 NCBI Caenorhabditis elegans C02E7.6 (C02E7.6) mRNA, complete cds. 9/11 A 
C02E7.6.1 ENSEMBL cdna:known chromosome:CEL140:V:4919039:4919471:1 gene:C02E7.6 9/11 A 
C02E7.6.2 ENSEMBL cdna:known chromosome:CEL140:V:4919039:4919583:1 gene:C02E7.6 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015182 4/11 Cross Hyb Matching Probes None
GENEFINDER00000015196 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4919040-4919367(+) 53.45 53.45
Public Domain and Genome References
Gene Title
Ensembl C02E7.6
Entrez Gene 178885 Entrez gene
SwissProt O16428 EMBL-EBI
WormBase CE07843 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:171796_X_AT
cggcacgagctcaaatctaaaatcatgcgtttcttcgttatcttcacctccatggtcgcc
gccacttccgctttcttgttcccatccggaggaggtggaggatgcggatgnnnnnnnnnn
nnnnnnnnnnnnngtggatgcggaggaggagctgctccaccaccagcatacgttgcccca
gccccagcctacgctgccccagccggaggagcctacgctgtcggaggacgcaaataagcg
aatcttttgacttcaatacagtttctgtacatttggaaaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGCACGAGCTCAAATCTAAAATCA 488 241 157 Antisense
GAGCTCAAATCTAAAATCATGCGTT 23 389 163 Antisense
ATCATGCGTTTCTTCGTTATCTTCA 494 29 178 Antisense
CTTGTTCCCATCCGGAGGAGGTGGA 421 217 231 Antisense
CCGGAGGAGGTGGAGGATGCGGATG 556 265 242 Antisense
GATGCGGAGGAGGAGCTGCTCCACC 698 413 293 Antisense
CCTACGCTGTCGGAGGACGCAAATA 6 269 368 Antisense
GGAGGACGCAAATAAGCGAATCTTT 433 515 379 Antisense
TAAGCGAATCTTTTGACTTCAATAC 349 637 391 Antisense
CTTTTGACTTCAATACAGTTTCTGT 139 223 400 Antisense
ATACAGTTTCTGTACATTTGGAAAA 286 23 412 Antisense
Sequence Source Affymetrix Proprietary Database