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[171795_x_at]

Description C71115 /REP_DB=TREMBL Accession /GB=C71115 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk440a9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 14      6grp_total > 10      4grp_total > 49      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12580
1 2 3 4 range
A 186.6
(-3)
P 		10139.2
(3)
P 		8645.5
(2.1)
P 		269.1
(-3)
P 		9953
B 176.9
(-3)
P 		10011.3
(1.7)
P 		12715.8
(3)
P 		249
(-3)
P 		12539
C 135.8
(-3)
P 		9831.3
(3)
P 		8199.4
(2)
P 		230.2
(-2.9)
P 		9696
avr 166.4
(-3) 		9993.9
(3) 		9853.6
(2.9) 		249.4
(-2.9) 		9828

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4107
1 2 3 4 5 6 range
A 2374.5
(-3)
P 		6022.1
(3)
P 		5568.3
(2.3)
P 		3145.1
(-1.7)
P 		2745.5
(-2.4)
P 		2908.3
(-2.1)
P 		3648
B 3612.8
(-1.2)
P 		6318.3
(3)
P 		5035.4
(1)
P 		2437.1
(-3)
P 		2806.1
(-2.4)
P 		2894.5
(-2.3)
P 		3881
C 2211.5
(-3)
P 		5680.9
(3)
P 		4037.1
(0.2)
P 		3527.4
(-0.7)
P 		2821.7
(-1.9)
P 		2867.4
(-1.9)
P 		3469
avr 2732.9
(-3) 		6007.1
(3) 		4880.3
(0.9) 		3036.5
(-2.4) 		2791.1
(-2.9) 		2890.1
(-2.7) 		3274
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2908
1 2 3 4 range
A 67.9
(-2.9)
P 		2200.9
(2.8)
P 		2260.1
(3)
P 		39.4
(-3)
P 		2221
B 56.4
(-3)
P 		2472.6
(2)
P 		2946.5
(3)
P 		53.1
(-3)
P 		2893
C 45
(-3)
P 		2826.6
(2.9)
P 		2857.7
(3)
P 		38.8
(-3)
P 		2819
avr 56.4
(-3) 		2500
(2.6) 		2688.1
(3) 		43.8
(-3) 		2644

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1704
1 2 3 4 5 6 range
A 437.7
(-3)
P 		2141.8
(3)
P 		1212.7
(-0.3)
P 		797.7
(-1.7)
P 		828.5
(-1.6)
P 		708.1
(-2)
P 		1704
B 1257.1
(-0.5)
P 		2103.1
(3)
P 		1222.7
(-0.6)
P 		645.5
(-3)
P 		1140.1
(-1)
P 		1079.4
(-1.2)
P 		1458
C 819.7
(-2.4)
P 		1733.4
(3)
P 		1027.5
(-1.1)
P 		709.4
(-3)
P 		913.1
(-1.8)
P 		959.9
(-1.5)
P 		1024
avr 838.2
(-2.4) 		1992.8
(3) 		1154.3
(-0.9) 		717.5
(-3) 		960.6
(-1.9) 		915.8
(-2.1) 		1275
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171795_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27641
Sequence Type Exemplar sequence
Representative Public ID C71115 NCBI
Target Description C71115 /REP_DB=TREMBL Accession /GB=C71115 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk440a9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058908(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058908 NCBI Caenorhabditis elegans R12E2.14 (R12E2.14) mRNA, complete cds. 9/11 A 
GENEFINDER00000012699 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4149878:4150563:1 9/11 None
SNAP00000012674 ENSEMBL cdna:SNAP chromosome:CEL140:I:4150001:4150563:1 9/11 None
R12E2.14 ENSEMBL cdna:known chromosome:CEL140:I:4150001:4150750:1 gene:R12E2.14 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027854 1/11 Cross Hyb Matching Probes None
NM_058907 3/11 Cross Hyb Matching Probes A 
SNAP00000012673 3/11 Cross Hyb Matching Probes None
GENEFINDER00000012698 3/11 Cross Hyb Matching Probes None
SNAP00000011222 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011235 1/11 Cross Hyb Matching Probes None
R12E2.15 3/11 Cross Hyb Matching Probes A 
ZK643.8 1/11 Cross Hyb Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4150005-4150635(+) 75.19 75.19
Public Domain and Genome References
Gene Title
Ensembl R12E2.14
Entrez Gene 172001 Entrez gene
SwissProt O61782 EMBL-EBI
WormBase CE18146 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:171795_X_AT
cctctggaaacgcctgtctcggaggtggaggtggtgccggtggatgctgcccaccagctc
agccaggatgtggaaacccatgccaaggagccggaccacaatacgcagctgnnnnnnnnn
nnnnnnnnnnnnagtacgctgctgcaccacaaggaggagcatacccaactgctggaaagt
tattcagctcgaagaattttatctgta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCTGGAAACGCCTGTCTCGGAGG 485 267 133 Antisense
AAACGCCTGTCTCGGAGGTGGAGGT 459 123 140 Antisense
CGGAGGTGGAGGTGGTGCCGGTGGA 535 241 152 Antisense
CCCACCAGCTCAGCCAGGATGTGGA 566 257 182 Antisense
GCCAGGATGTGGAAACCCATGCCAA 257 281 194 Antisense
TGGAAACCCATGCCAAGGAGCCGGA 533 545 203 Antisense
CGCTGCTGCACCACAAGGAGGAGCA 378 255 269 Antisense
AAGGAGGAGCATACCCAACTGCTGG 643 159 283 Antisense
GGAGCATACCCAACTGCTGGAAAGT 496 519 288 Antisense
ACTGCTGGAAAGTTATTCAGCTCGA 216 99 300 Antisense
TTCAGCTCGAAGAATTTTATCTGTA 315 687 315 Antisense
Sequence Source Affymetrix Proprietary Database