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[171794_x_at]

Description C68575 /REP_DB=TREMBL Accession /GB=C68575 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk305f5 : 5prime end, single read.
Cluster 6grp_total > 03      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 156.3
(-0.8)
P 		91.6
(-3)
A 		93
(-3)
A 		271.9
(3)
P 		180
B 178.9
(2.4)
P 		65.5
(-3)
A 		79.7
(-2.3)
A 		191.7
(3)
P 		126
C 144.4
(-0.6)
P 		115.7
(-1.3)
A 		53.8
(-3)
A 		277.1
(3)
P 		223
avr 159.9
(-0) 		90.9
(-2.5) 		75.5
(-3) 		246.9
(3) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 77.2
(0.7)
A 		69.7
(0.2)
A 		112.7
(3)
P 		102.4
(2.3)
A 		57
(-0.6)
A 		19.3
(-3)
A 		93
B 96.3
(1.7)
A 		72.5
(0.4)
A 		66
(0)
A 		100.6
(2)
A 		119.1
(3)
P 		12.1
(-3)
A 		107
C 81
(-0.3)
P 		116.5
(3)
P 		52.5
(-3)
A 		64.8
(-1.8)
A 		65.3
(-1.8)
P 		56.8
(-2.6)
A 		64
avr 84.8
(2.5) 		86.2
(2.7) 		77.1
(1.8) 		89.3
(3) 		80.5
(2.1) 		29.4
(-3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 56.9
(3)
P 		19.9
(-3)
A 		24.3
(-2.3)
A 		39.8
(0.2)
P 		37
B 57
(3)
P 		16.2
(-3)
A 		18.5
(-2.7)
A 		40.8
(0.6)
P 		41
C 47.8
(3)
P 		33.3
(0)
A 		18.7
(-3)
A 		46.7
(2.8)
P 		29
avr 53.9
(3) 		23.1
(-2.5) 		20.5
(-3) 		42.4
(0.9) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 14.2
(-0.3)
A 		24.8
(2.7)
A 		24.5
(2.6)
P 		26
(3)
A 		17.2
(0.5)
A 		4.7
(-3)
A 		21
B 33.5
(1)
A 		24.1
(-0.3)
A 		16
(-1.4)
A 		26.6
(0)
A 		48.4
(3)
P 		4.5
(-3)
A 		44
C 30
(1.5)
P 		35.5
(3)
P 		13.4
(-2.9)
A 		13
(-3)
A 		21.1
(-0.8)
P 		19
(-1.4)
A 		23
avr 25.9
(2.1) 		28.1
(2.8) 		18
(-0.4) 		21.9
(0.8) 		28.9
(3) 		9.4
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171794_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27623
Sequence Type Exemplar sequence
Representative Public ID C68575 NCBI
Target Description C68575 /REP_DB=TREMBL Accession /GB=C68575 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk305f5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029770, NM_171629, NM_171627, NM_001029771
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W05H7.4c ENSEMBL cdna:known chromosome:CEL140:X:1444297:1446571:-1 gene:W05H7.4 A 
SNAP00000043340 ENSEMBL cdna:SNAP chromosome:CEL140:X:1446017:1446571:-1 None
W05H7.4d ENSEMBL cdna:known chromosome:CEL140:X:1446455:1446571:-1 gene:W05H7.4 None
NM_001029771 NCBI Caenorhabditis elegans W05H7.4e (W05H7.4) mRNA, complete cds. None
NM_171627 NCBI Caenorhabditis elegans W05H7.4b (W05H7.4) mRNA, complete cds. A 
NM_171629 NCBI Caenorhabditis elegans W05H7.4c (W05H7.4) mRNA, complete cds. None
NM_001029770 NCBI Caenorhabditis elegans W05H7.4d (W05H7.4) mRNA, complete cds. None
SNAP00000043339 ENSEMBL cdna:SNAP chromosome:CEL140:X:1440626:1445592:-1 None
W05H7.4b ENSEMBL cdna:known chromosome:CEL140:X:1440368:1446638:-1 gene:W05H7.4 A 
GENEFINDER00000043342 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1440626:1448616:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1444738-1446592(-) 85.42 85.42
Public Domain and Genome References
Ensembl W05H7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024942 W05H7.4e [Caenorhabditis elegans] gb|AAX55684.1| Hypothetical protein W05H7.4e [Caenorhabditis elegans] 0.0
blast NP_741719 W05H7.4b [Caenorhabditis elegans] gb|AAQ01521.1| Hypothetical protein W05H7.4b [Caenorhabditis elegans] 0.0
blast NP_741720 W05H7.4a [Caenorhabditis elegans] gb|AAQ01520.1| Hypothetical protein W05H7.4a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.3E-5
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.3E-5
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.3E-5
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.3E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741721.2 1 178-200
Sequence
Target Sequence 
>C. ELEGANS:171794_X_AT
ggatttgggcaggagcagcagttaaattccgcaccaacaccgtctccaatggccgacgtc
tacaccccgaccaagacattggacggcgccttcctgccagcagtgggatccccgaacacc
tccatcgactctccggcagtctacgtaccgacaccactcaccgcgccatccacatcgaag
acgactccagtgaagcccgaggatcagacaacgcggcagaaatatggaggtacatggaag
ctccgacacttgggaatgagatggagatgtgctcttcccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTTGGGCAGGAGCAGCAGTTAA 144 511 13 Antisense
CAGCAGTTAAATTCCGCACCAACAC 470 201 28 Antisense
CTACACCCCGACCAAGACATTGGAC 312 227 72 Antisense
GACCAAGACATTGGACGGCGCCTTC 211 385 81 Antisense
CCATCCACATCGAAGACGACTCCAG 670 271 178 Antisense
ACGACTCCAGTGAAGCCCGAGGATC 316 93 193 Antisense
GCCCGAGGATCAGACAACGCGGCAG 74 285 207 Antisense
GACAACGCGGCAGAAATATGGAGGT 85 365 219 Antisense
GAGGTACATGGAAGCTCCGACACTT 400 403 239 Antisense
GGAAGCTCCGACACTTGGGAATGAG 34 531 248 Antisense
TGAGATGGAGATGTGCTCTTCCCAC 197 569 269 Antisense
Sequence Source Affymetrix Proprietary Database