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[171791_at] low density lipid receptor-rlated protein

Description C54461_rc /REP_DB=TREMBL Accession /GB=C54461 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk358b4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 57      6grp_total > 81      4grp_total > 06      6grp_highest_sub > 04_05      6grp_cgc > 86      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2152
1 2 3 4 range
A 2511.1
(2)
P 		1656.3
(-3)
P 		2017.2
(-0.9)
P 		2679.6
(3)
P 		1023
B 2188.2
(-1.8)
P 		2016.8
(-2.4)
P 		1826.9
(-3)
P 		3707.4
(3)
P 		1881
C 2510.3
(3)
P 		1555.7
(-3)
P 		1861.5
(-1.1)
P 		2399.1
(2.3)
P 		955
avr 2403.2
(0.3) 		1742.9
(-3) 		1901.9
(-2.2) 		2928.7
(3) 		1186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1487
1 2 3 4 5 6 range
A 2624.8
(0.7)
P 		2758.3
(1.3)
P 		1702.5
(-3)
P 		2778.1
(1.3)
P 		3189.1
(3)
P 		2415.3
(-0.1)
P 		1487
B 2371.8
(-1.8)
P 		2174.3
(-3)
P 		2500.2
(-1.1)
P 		3188.4
(3)
P 		2238
(-2.6)
P 		2185.5
(-2.9)
P 		1014
C 2112.5
(-2.9)
P 		2343.3
(-1.2)
P 		2917
(3)
P 		2771.5
(1.9)
P 		2677.4
(1.2)
P 		2099.8
(-3)
P 		817
avr 2369.7
(-1.8) 		2425.3
(-1.3) 		2373.2
(-1.8) 		2912.7
(3) 		2701.5
(1.1) 		2233.5
(-3) 		679
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 555
1 2 3 4 range
A 914.3
(3)
P 		359.5
(-3)
P 		527.3
(-1.2)
P 		392.2
(-2.6)
P 		555
B 697.8
(1.5)
P 		498.1
(-1.8)
P 		423.3
(-3)
P 		790.1
(3)
P 		367
C 831
(3)
P 		447.3
(-2.4)
P 		648.8
(0.4)
P 		404.5
(-3)
P 		427
avr 814.4
(3) 		435
(-3) 		533.1
(-1.4) 		528.9
(-1.5) 		379

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 610
1 2 3 4 5 6 range
A 483.9
(-1.9)
P 		981
(3)
P 		370.8
(-3)
P 		704.6
(0.3)
P 		962.3
(2.8)
P 		588.1
(-0.9)
P 		610
B 825.3
(1.3)
P 		723.7
(-0.7)
P 		607.1
(-3)
P 		844.5
(1.7)
P 		909.3
(3)
P 		815
(1.1)
P 		302
C 783
(1.4)
P 		715
(0.1)
P 		742.4
(0.6)
P 		557.4
(-3)
P 		866.4
(3)
P 		702.9
(-0.2)
P 		309
avr 697.4
(-0.8) 		806.6
(1.1) 		573.4
(-3) 		702.2
(-0.7) 		912.7
(3) 		702
(-0.7) 		339
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 171791_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27915
Sequence Type Exemplar sequence
Representative Public ID C54461 NCBI
Target Description C54461_rc /REP_DB=TREMBL Accession /GB=C54461 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk358b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059726(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059726 NCBI Caenorhabditis elegans Low-density lipoprotein Receptor Related family member (lrp-1) (lrp-1) mRNA, complete cds. 11/11 None
F29D11.1 ENSEMBL cdna:known chromosome:CEL140:I:7622398:7642270:1 gene:F29D11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7641913-7642135(+) 71.43 71.43
Public Domain and Genome References
Gene Title low density lipid receptor-rlated protein
Gene Symbol lrp-1
Ensembl F29D11.1
Entrez Gene 172520 Entrez gene
SwissProt Q04833 EMBL-EBI
WormBase CE05765 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1601606_AT similar to Low-density lipoprotein receptor-related protein 2 precursor (Megalin) (Glycoprotein 330) (gp330) cfa
CANINE:1591293_AT similar to Low-density lipoprotein receptor-related protein 2 precursor (Megalin) (Glycoprotein 330) (gp330) cfa
CANINE:1590707_AT similar to Low-density lipoprotein receptor-related protein 2 precursor (Megalin) (Glycoprotein 330) (gp330) cfa
CANINE_2:CFA.13786.1.A1_S_AT similar to Low-density lipoprotein receptor-related protein 2 precursor (Megalin) (Glycoprotein 330) (gp330) cfa
CANINE_2:CFA.14034.1.A1_AT similar to Low-density lipoprotein receptor-related protein 2 precursor (Megalin) (Glycoprotein 330) (gp330) cfa
CANINE_2:CFA.17027.1.S1_AT similar to Low-density lipoprotein receptor-related protein 2 precursor (Megalin) (Glycoprotein 330) (gp330) cfa
CANINE_2:CFAAFFX.18972.1.S1_S_AT similar to Low-density lipoprotein receptor-related protein 2 precursor (Megalin) (Glycoprotein 330) (gp330) cfa
CANINE_2:CFAAFFX.19031.1.S1_S_AT similar to Low-density lipoprotein receptor-related protein 2 precursor (Megalin) (Glycoprotein 330) (gp330) cfa
DROSOPHILA_2:1641272_AT dm
DROSGENOME1:152473_AT dm
CHICKEN:GGA.17373.1.S1_S_AT low density lipoprotein-related protein 2 gga
CHICKEN:GGAAFFX.23355.1.S1_AT low density lipoprotein-related protein 2 gga
CHICKEN:GGAAFFX.23355.2.S1_AT low density lipoprotein-related protein 2 gga
CHICKEN:GGAAFFX.23355.3.S1_S_AT low density lipoprotein-related protein 2 gga
CHICKEN:GGAAFFX.23355.5.S1_S_AT low density lipoprotein-related protein 2 gga
CHICKEN:GGAAFFX.23355.6.S1_AT low density lipoprotein-related protein 2 gga
CHICKEN:GGAAFFX.23355.6.S1_S_AT low density lipoprotein-related protein 2 gga
CHICKEN:GGAAFFX.6861.1.S1_S_AT low density lipoprotein-related protein 2 gga
CHICKEN:GGAAFFX.6862.1.S1_S_AT low density lipoprotein-related protein 2 gga
HG-U133_PLUS_2:205710_AT low density lipoprotein-related protein 2 hs
HG-U133A:205710_AT low density lipoprotein-related protein 2 hs
HG-FOCUS:205710_AT low density lipoprotein-related protein 2 hs
HG-U133A_2:205710_AT low density lipoprotein-related protein 2 hs
HUGENEFL:U33837_AT low density lipoprotein-related protein 2 hs
U133_X3P:G6806918_3P_AT low density lipoprotein-related protein 2 hs
HG-U95AV2:35009_AT low density lipoprotein-related protein 2 hs
HG-U95D:85083_AT low density lipoprotein-related protein 2 hs
HG-U133_PLUS_2:230863_AT Low density lipoprotein-related protein 2 hs
HG-U133B:230863_AT Low density lipoprotein-related protein 2 hs
HG-U95B:50554_AT Low density lipoprotein-related protein 2 hs
HU35KSUBB:RC_R73030_AT Low density lipoprotein-related protein 2 hs
HU35KSUBB:RC_T62626_AT Low density lipoprotein-related protein 2 hs
U133_X3P:HS.252938.0.A1_3P_AT Low density lipoprotein-related protein 2 hs
MU11KSUBB:MSA.32856.0_S_AT similar to low density lipoprotein receptor-related protein 2 mm
MG-U74AV2:103377_AT similar to low density lipoprotein receptor-related protein 2 mm
MG-U74BV2:109339_AT similar to low density lipoprotein receptor-related protein 2 mm
MOE430A:1427133_S_AT similar to low density lipoprotein receptor-related protein 2 mm
MOUSE430A_2:1427133_S_AT similar to low density lipoprotein receptor-related protein 2 mm
MOUSE430_2:1427133_S_AT similar to low density lipoprotein receptor-related protein 2 mm
MOE430A:1452320_AT similar to low density lipoprotein receptor-related protein 2 mm
MOUSE430A_2:1452320_AT similar to low density lipoprotein receptor-related protein 2 mm
MOUSE430_2:1452320_AT similar to low density lipoprotein receptor-related protein 2 mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
16740 transferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98124 Hypothetical protein F29D11.1 [Caenorhabditis elegans] ref|NP_492127.1| Low-density lipoprotein Receptor Related family member (lrp-1) [Caenorhabditis elegans] sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related protein precursor (LRP) gb|AAA28105.1| LDL receptor-related protein [Caenorhabditis elegans] 0.0
blast CAE66567 Hypothetical protein CBG11882 [Caenorhabditis briggsae] 0.0
blast EAA06237 ENSANGP00000014849 [Anopheles gambiae str. PEST] ref|XP_310784.2| ENSANGP00000014849 [Anopheles gambiae str. PEST] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 5.6E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 3.2E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 4.3E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 4.7E-4
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 3.0E-13
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 8.2E-15
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 9.9E-10
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 3.8E-14
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 3.1E-13
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.8E-11
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.0E-12
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 6.3E-14
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.5E-19
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 4.5E-21
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.1E-17
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 5.9E-15
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 6.6E-18
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.5E-10
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 9.4E-10
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.5E-16
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 5.0E-5
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.0E-10
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 5.4E-10
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 5.1E-10
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.0E-15
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 7.1E-19
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.2E-11
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.2E-12
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.1E-6
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.6E-12
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 7.3E-16
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.2E-5
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 6.2E-15
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 7.9E-12
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.3E-7
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.8E-18
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.7E-15
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.3E-12
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 2.3E-5
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 3.7E-9
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 1.7E-12
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 2.3E-14
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 1.0E-6
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 7.2E-6
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 5.2E-5
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 5.1E-5
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 1.9E-10
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 6.0E-9
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 1.9E-13
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 3.2E-15
Pfam IPR000033 EMBL-EBI Low-density lipoprotein receptor, YWTD repeat 1.5E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492127.1 1 4574-4596
F29D11.1 1 4574-4596
Sequence
Target Sequence 
>C. ELEGANS:171791_AT
acatttgctccctgtaactcaattttgtgcccatttagatattattttcactagaaattt
cc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATTTGCTCCCTGTAACTCAATTT 168 105 196 Antisense
ATTTGCTCCCTGTAACTCAATTTTG 8 19 198 Antisense
GCTCCCTGTAACTCAATTTTGTGCC 369 299 202 Antisense
TCCCTGTAACTCAATTTTGTGCCCA 18 599 204 Antisense
CCTGTAACTCAATTTTGTGCCCATT 504 265 206 Antisense
GTAACTCAATTTTGTGCCCATTTAG 44 463 209 Antisense
AACTCAATTTTGTGCCCATTTAGAT 218 139 211 Antisense
TCAATTTTGTGCCCATTTAGATATT 291 633 214 Antisense
TTTTGTGCCCATTTAGATATTATTT 52 679 218 Antisense
TGCCCATTTAGATATTATTTTCACT 254 585 223 Antisense
GATATTATTTTCACTAGAAATTTCC 516 425 233 Antisense
Sequence Source Affymetrix Proprietary Database