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[171787_x_at] Band 7 family

Description C59724_rc /REP_DB=TREMBL Accession /GB=C59724 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk440h1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 06      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 10      6grp_total > 07      4grp_total > 45      6grp_highest_sub > De      6grp_cgc > 11      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1174
1 2 3 4 range
A 2188.9
(3)
P 		1656.8
(-1)
P 		1399
(-3)
P 		1426.4
(-2.8)
P 		790
B 2412.9
(3)
P 		1814.8
(-0.1)
P 		1239.4
(-3)
P 		1477.1
(-1.8)
P 		1174
C 2121.2
(3)
P 		1875.2
(1.1)
P 		1420.2
(-2.5)
P 		1355.4
(-3)
P 		766
avr 2241
(3) 		1782.3
(-0.1) 		1352.9
(-3) 		1419.6
(-2.5) 		888

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 866
1 2 3 4 5 6 range
A 1779.1
(3)
P 		1573.1
(1.1)
P 		1174.2
(-2.6)
P 		1226.1
(-2.1)
P 		1129.7
(-3)
P 		1167.3
(-2.7)
P 		649
B 1907.1
(3)
P 		1310.4
(-1.1)
P 		1149.3
(-2.3)
P 		1310.7
(-1.1)
P 		1041.5
(-3)
P 		1133.6
(-2.4)
P 		866
C 1683.2
(3)
P 		1195.6
(-1.9)
P 		1668.4
(2.9)
P 		1195.1
(-1.9)
P 		1136.7
(-2.5)
P 		1091.1
(-3)
P 		592
avr 1789.8
(3) 		1359.7
(-0.8) 		1330.6
(-1) 		1244
(-1.8) 		1102.6
(-3) 		1130.7
(-2.8) 		687
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 588
1 2 3 4 range
A 797
(3)
P 		359.7
(-1.5)
P 		365.7
(-1.4)
P 		208.8
(-3)
P 		588
B 769.5
(3)
P 		448.2
(-1)
P 		287.2
(-3)
P 		314.8
(-2.7)
P 		482
C 702.2
(3)
P 		539.1
(0.9)
P 		495
(0.4)
P 		228.5
(-3)
P 		474
avr 756.2
(3) 		449
(-0.6) 		382.6
(-1.4) 		250.7
(-3) 		506

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 423
1 2 3 4 5 6 range
A 328
(-1.6)
P 		559.5
(3)
P 		255.7
(-3)
P 		311
(-1.9)
P 		340.9
(-1.3)
P 		284.2
(-2.4)
P 		304
B 663.6
(3)
P 		436.2
(-0.5)
P 		279.1
(-3)
P 		347.2
(-1.9)
P 		423.2
(-0.8)
P 		422.7
(-0.8)
P 		385
C 623.9
(3)
P 		364.8
(-1.1)
P 		424.6
(-0.1)
P 		240.3
(-3)
P 		367.8
(-1)
P 		365.2
(-1)
P 		384
avr 538.5
(3) 		453.5
(0.9) 		319.8
(-2.5) 		299.5
(-3) 		377.3
(-1) 		357.4
(-1.5) 		239
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171787_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27791
Sequence Type Exemplar sequence
Representative Public ID C59724 NCBI
Target Description C59724_rc /REP_DB=TREMBL Accession /GB=C59724 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk440h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077543
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y71H9A.3.1 ENSEMBL cdna:known chromosome:CEL140:X:11644064:11647201:1 gene:Y71H9A.3 A 
NM_077543 NCBI Caenorhabditis elegans STOmatin family member (sto-4) (sto-4) mRNA, complete cds. A 
Y71H9A.3.2 ENSEMBL cdna:known chromosome:CEL140:X:11644126:11647201:1 gene:Y71H9A.3 A 
GENEFINDER00000020409 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11645390:11646954:1 None
SNAP00000020396 ENSEMBL cdna:SNAP chromosome:CEL140:X:11645735:11646954:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11646245-11647133(+) 99.34 99.34
Public Domain and Genome References
Gene Title Band 7 family
Gene Symbol sto-4
Ensembl Y71H9A.3
Entrez Gene 181350 Entrez gene
SwissProt Q22165 EMBL-EBI
WormBase CE22957 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624679_AT dm
DROSGENOME1:151362_R_AT dm
DROSGENOME1:145351_AT dm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB76415 Hypothetical protein Y71H9A.3 [Caenorhabditis elegans] emb|CAB82215.1| Hypothetical protein Y71H9A.3 [Caenorhabditis elegans] ref|NP_509944.1| STOmatin family member (sto-4) [Caenorhabditis elegans] sp|Q22165|STO4_CAEEL Stomatin protein 1.0E-138
blast CAE70604 Hypothetical protein CBG17279 [Caenorhabditis briggsae] 1.0E-137
blast CAE70605 Hypothetical protein CBG17281 [Caenorhabditis briggsae] 1.0E-103
blast CAE70604 Hypothetical protein CBG17279 [Caenorhabditis briggsae] 3.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR001107 EMBL-EBI Band 7 protein 3.8E-80
Pfam IPR001107 EMBL-EBI Band 7 protein 3.7E-48
Pfam IPR001107 EMBL-EBI Band 7 protein 1.1E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509944.1 1 21-43
Y71H9A.3.1 1 21-43
Y71H9A.3.2 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:171787_X_AT
gtgcattcaacttcgatatctacaaacattaaatagtataagttctgagaagaacaacac
aatcatcttcccgttcccaactgagttgattgcaaagttcatccagtcttgctgccgcgt
gattatcagatttgtgtctccttccatacatctcgaccaaacaatcgtctgacttgtcat
annnnnnnnnnnnnnnnnnnnnnnnntttcctgtgaactttaaatattaaccagnnnnnt
tgactaccttgaattgacgtaatctc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCATTCAACTTCGATATCTACAA 187 481 13 Antisense
AGAACAACACAATCATCTTCCCGTT 538 73 63 Antisense
CTTCCCGTTCCCAACTGAGTTGATT 298 219 79 Antisense
GCAAAGTTCATCCAGTCTTGCTGCC 121 319 104 Antisense
TCTTGCTGCCGCGTGATTATCAGAT 451 617 119 Antisense
GCTGCCGCGTGATTATCAGATTTGT 631 297 123 Antisense
TATCAGATTTGTGTCTCCTTCCATA 109 661 136 Antisense
CTTCCATACATCTCGACCAAACAAT 383 219 153 Antisense
CTCGACCAAACAATCGTCTGACTTG 384 233 164 Antisense
CCAAACAATCGTCTGACTTGTCATA 307 275 169 Antisense
GACTACCTTGAATTGACGTAATCTC 638 371 254 Antisense
Sequence Source Affymetrix Proprietary Database