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[171786_x_at] 60s ribosomal protein L35A

Description C56989_rc /REP_DB=TREMBL Accession /GB=C56989 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk308e6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      4grp_highest_8_8 > 30      4grp_high_8_8 > 07      6grp_highest_nonorm > 09      6grp_total > 52      4grp_total > 0      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39774
1 2 3 4 range
A 24485
(-1.3)
P 		12984.2
(-3)
P 		20508.8
(-1.9)
P 		52758.4
(3)
P 		39774
B 23249.9
(-3)
P 		24489.7
(-1.8)
P 		29557.1
(3)
P 		28384.8
(1.9)
P 		6307
C 23971.2
(-1.2)
P 		15585.5
(-3)
P 		20051.8
(-2)
P 		43552
(3)
P 		27967
avr 23902
(-1.4) 		17686.5
(-3) 		23372.6
(-1.6) 		41565.1
(3) 		23879

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13404
1 2 3 4 5 6 range
A 20544.8
(-3)
P 		25615.6
(-0.3)
P 		31636.3
(3)
P 		27214.4
(0.6)
P 		23096.3
(-1.6)
P 		26290.9
(0.1)
P 		11092
B 26649.9
(2.6)
P 		25650.7
(1.5)
P 		27044.1
(3)
P 		25426.4
(1.2)
P 		22424.2
(-2.1)
P 		21591.7
(-3)
P 		5452
C 18232.2
(-3)
P 		26882.2
(1.9)
P 		28759.5
(3)
P 		25966.6
(1.4)
P 		21002.9
(-1.4)
P 		20539.3
(-1.7)
P 		10527
avr 21809
(-3) 		26049.5
(0.5) 		29146.6
(3) 		26202.5
(0.6) 		22174.5
(-2.7) 		22807.3
(-2.2) 		7338
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6097
1 2 3 4 range
A 8915
(3)
P 		2818.5
(-3)
P 		5361.4
(-0.5)
P 		7722.8
(1.8)
P 		6097
B 7414.2
(3)
P 		6048.4
(-3)
P 		6849.1
(0.5)
P 		6048.8
(-3)
P 		1366
C 7935.1
(3)
P 		4480.9
(-3)
P 		6988.7
(1.4)
P 		7343.5
(2)
P 		3454
avr 8088.1
(3) 		4449.3
(-3) 		6399.7
(0.2) 		7038.4
(1.3) 		3639

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5486
1 2 3 4 5 6 range
A 3787.3
(-3)
P 		9110.2
(3)
P 		6889.7
(0.5)
P 		6902.2
(0.5)
P 		6969.5
(0.6)
P 		6401
(-0.1)
P 		5323
B 9272.9
(3)
P 		8538
(1.4)
P 		6567.1
(-3)
P 		6734.6
(-2.6)
P 		9110.7
(2.6)
P 		8051.4
(0.3)
P 		2706
C 6757.9
(0.1)
P 		8202.6
(3)
P 		7319.8
(1.2)
P 		5221.9
(-3)
P 		6796.2
(0.2)
P 		6875.7
(0.3)
P 		2981
avr 6606
(-2.2) 		8616.9
(3) 		6925.5
(-1.4) 		6286.2
(-3) 		7625.5
(0.4) 		7109.4
(-0.9) 		2331
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171786_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27762
Sequence Type Exemplar sequence
Representative Public ID C56989 NCBI
Target Description C56989_rc /REP_DB=TREMBL Accession /GB=C56989 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk308e6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063067
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000000726 ENSEMBL cdna:SNAP chromosome:CEL140:II:7105499:7108693:1 None
F10E7.7.2 ENSEMBL cdna:known chromosome:CEL140:II:7105493:7106247:1 gene:F10E7.7 A 
GENEFINDER00000000740 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7105499:7106187:1 None
NM_063067 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-33) (rpl-33) mRNA, complete cds. A 
F10E7.7.1 ENSEMBL cdna:known chromosome:CEL140:II:7105486:7106392:1 gene:F10E7.7 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7105803-7106113(+) 85.81 85.81
Public Domain and Genome References
Gene Title 60s ribosomal protein L35A
Gene Symbol rpl-33
Ensembl F10E7.7
Entrez Gene 174166 Entrez gene
SwissProt P49180 EMBL-EBI
WormBase CE04362 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256065_AT 60S ribosomal protein L35a (RPL35aA) at
CANINE:1583720_S_AT similar to ribosomal protein L35a cfa
CANINE:1583719_AT similar to ribosomal protein L35a cfa
CANINE_2:CFA.704.1.S1_AT similar to ribosomal protein L35a cfa
CANINE_2:CFAAFFX.19688.1.S1_S_AT similar to ribosomal protein L35a cfa
DROSOPHILA_2:1623995_AT Ribosomal protein L35A dm
DROSGENOME1:149334_AT Ribosomal protein L35A dm
CHICKEN:GGA.4459.4.S1_A_AT ribosomal protein L35a gga
CHICKEN:GGAAFFX.20205.1.S1_S_AT ribosomal protein L35a gga
CHICKEN:GGA.4459.2.S1_A_AT Ribosomal protein L35a gga
HG-U133_PLUS_2:215249_AT ribosomal protein L35a hs
HG-U133A_2:215249_AT ribosomal protein L35a hs
HG-U133A:215249_AT ribosomal protein L35a hs
HG-U133A_2:213687_S_AT ribosomal protein L35a hs
HG-U133_PLUS_2:213687_S_AT ribosomal protein L35a hs
HG-U133A:213687_S_AT ribosomal protein L35a hs
HUGENEFL:X52966_AT ribosomal protein L35a hs
U133_X3P:HS2.407059.1.S1_3P_S_AT ribosomal protein L35a hs
U133_X3P:HS.289093.0.A1_3P_X_AT ribosomal protein L35a hs
HG-U133_PLUS_2:225190_X_AT ribosomal protein L35a hs
HG-U133B:225190_X_AT ribosomal protein L35a hs
HU35KSUBC:RC_N70646_AT Ribosomal protein L35a hs
HG-U133_PLUS_2:215208_X_AT Ribosomal protein L35a hs
HG-U133A_2:215208_X_AT Ribosomal protein L35a hs
HG-U133A:215208_X_AT Ribosomal protein L35a hs
U133_X3P:HS.293287.0.A1_3P_AT Ribosomal protein L35a hs
U133_X3P:HS.289093.0.S1_3P_AT Ribosomal protein L35a hs
HG-U133_PLUS_2:238026_AT Ribosomal protein L35a hs
HG-U133B:238026_AT Ribosomal protein L35a hs
HG-U95C:53255_AT Ribosomal protein L35a hs
U133_X3P:HS.179666.3.A1_3P_AT Ribosomal protein L35a hs
U133_X3P:HS.179666.3.A1_3P_X_AT Ribosomal protein L35a hs
MOE430A:1417317_S_AT ribosomal protein L35a mm
MOUSE430A_2:1417317_S_AT ribosomal protein L35a mm
MOUSE430_2:1417317_S_AT ribosomal protein L35a mm
MG-U74AV2:93513_AT ribosomal protein L35a mm
MU19KSUBB:TC26624_F_AT Ribosomal protein L35a, mRNA (cDNA clone MGC:25278 IMAGE:4036717) mm
MU19KSUBB:TC33009_F_AT Ribosomal protein L35a, mRNA (cDNA clone MGC:25278 IMAGE:4036717) mm
RAE230A:1398760_AT ribosomal protein L35a rn
RAT230_2:1398760_AT ribosomal protein L35a rn
YEAST_2:1779816_AT Ribosomal protein L37 of the large (60S) ribosomal subunit, nearly identical to Rpl33Ap and has similarity to rat L35a; rpl33b null mutant exhibits normal growth while rpl33a rpl33b double null mutant is inviable Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82422 Ribosomal protein, large subunit protein 33 [Caenorhabditis elegans] ref|NP_495468.1| Ribosomal Protein, Large subunit family member (rpl-33) [Caenorhabditis elegans] sp|P49180|RL35A_CAEEL 60S ribosomal protein L35a 9.0E-67
blast AAA82422 Ribosomal protein, large subunit protein 33 [Caenorhabditis elegans] ref|NP_495468.1| Ribosomal Protein, Large subunit family member (rpl-33) [Caenorhabditis elegans] sp|P49180|RL35A_CAEEL 60S ribosomal protein L35a 1.0E-62
blast CAE67541 Hypothetical protein CBG13066 [Caenorhabditis briggsae] 1.0E-62
blast CAE67541 Hypothetical protein CBG13066 [Caenorhabditis briggsae] 2.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001780 EMBL-EBI Ribosomal protein L35Ae 6.9E-74
Pfam IPR001780 EMBL-EBI Ribosomal protein L35Ae 2.8E-75
Sequence
Target Sequence 
>C. ELEGANS:171786_X_AT
ggtgcaggattcgccaggaggaggatttcgcaacccaatccggagcaacacttcgctttt
gaagcttgaggggtcttcaacaaggaagatgctggtttntacgccggaaagcgcgtcgtc
tacttgtacaaggcccacaacaagactttgaaaaccggacacaccgtcgccacccgtacc
cgtgctatctggggaaagatcactcgcccacacggaaacgccggagccgttagagccaag
ttccatc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCAGGATTCGCCAGGAGGAGGA 621 497 22 Antisense
AGGAGGAGGATTTCGCAACCCAATC 472 55 37 Antisense
CAATCCGGAGCAACACTTCGCTTTT 348 181 57 Antisense
GAGCAACACTTCGCTTTTGAAGCTT 126 391 64 Antisense
GAAGCTTGAGGGGTCTTCAACAAGG 21 341 82 Antisense
CGCGTCGTCTACTTGTACAAGGCCC 422 255 133 Antisense
TACAAGGCCCACAACAAGACTTTGA 459 641 148 Antisense
CCGTACCCGTGCTATCTGGGGAAAG 548 263 195 Antisense
CTGGGGAAAGATCACTCGCCCACAC 258 241 210 Antisense
CACACGGAAACGCCGGAGCCGTTAG 205 171 230 Antisense
GGAGCCGTTAGAGCCAAGTTCCATC 23 491 244 Antisense
Sequence Source Affymetrix Proprietary Database