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[171785_x_at]

Description C37758_rc /REP_DB=TREMBL Accession /GB=C37758 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk478b1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 29      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 10      6grp_total > 26      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 981
1 2 3 4 range
A 2015
(3)
P 		1434.3
(-1.3)
P 		1212.6
(-3)
P 		1342.8
(-2)
P 		802
B 2061.8
(3)
P 		1080.8
(-3)
P 		1105.4
(-2.8)
P 		1780.7
(1.3)
P 		981
C 2025.1
(3)
P 		1211.8
(-3)
P 		1228.5
(-2.9)
P 		1351.4
(-2)
P 		813
avr 2034
(3) 		1242.3
(-2.6) 		1182.2
(-3) 		1491.6
(-0.8) 		852

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1127
1 2 3 4 5 6 range
A 1784.5
(3)
P 		1385.8
(0.3)
P 		900.7
(-3)
P 		974
(-2.5)
P 		1213.5
(-0.9)
P 		896.9
(-3)
P 		888
B 1985
(3)
P 		1835.9
(2.2)
P 		869.7
(-3)
P 		1133.7
(-1.6)
P 		1267.7
(-0.9)
P 		1316.8
(-0.6)
P 		1115
C 1771.7
(3)
P 		1663
(2.3)
P 		891.5
(-2.8)
P 		857.7
(-3)
P 		1065.7
(-1.6)
P 		1182.2
(-0.9)
P 		914
avr 1847.1
(3) 		1628.2
(1.6) 		887.3
(-3) 		988.5
(-2.4) 		1182.3
(-1.2) 		1132
(-1.5) 		960
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 537
1 2 3 4 range
A 733.6
(3)
P 		311.3
(-1.7)
P 		317
(-1.7)
P 		196.6
(-3)
P 		537
B 657.5
(3)
P 		266.9
(-2.8)
P 		256.1
(-3)
P 		379.5
(-1.2)
P 		401
C 670.4
(3)
P 		348.4
(-1.4)
P 		428.2
(-0.3)
P 		227.9
(-3)
P 		443
avr 687.2
(3) 		308.9
(-2.4) 		333.8
(-2.1) 		268
(-3) 		419

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 518
1 2 3 4 5 6 range
A 329
(-0.3)
P 		492.9
(3)
P 		196.1
(-3)
P 		247
(-2)
P 		366.2
(0.4)
P 		218.4
(-2.5)
P 		297
B 690.7
(3)
P 		611.1
(2)
P 		211.2
(-3)
P 		300.3
(-1.9)
P 		515
(0.8)
P 		491
(0.5)
P 		480
C 656.7
(3)
P 		507.4
(1.1)
P 		226.9
(-2.3)
P 		172.5
(-3)
P 		344.8
(-0.9)
P 		395.7
(-0.2)
P 		484
avr 558.8
(3) 		537.1
(2.6) 		211.4
(-3) 		239.9
(-2.5) 		408.7
(0.4) 		368.4
(-0.3) 		347
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171785_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27758
Sequence Type Exemplar sequence
Representative Public ID C37758 NCBI
Target Description C37758_rc /REP_DB=TREMBL Accession /GB=C37758 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk478b1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072623, NM_171488, NM_171932
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C37C3.2c ENSEMBL cdna:known chromosome:CEL140:V:7858573:7860508:1 gene:C37C3.2 A 
GENEFINDER00000006088 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7858573:7860264:1 None
SNAP00000006081 ENSEMBL cdna:SNAP chromosome:CEL140:V:7858573:7860264:1 None
NM_171932 NCBI Caenorhabditis elegans C37C3.2b (C37C3.2) mRNA, complete cds. A 
NM_171488 NCBI Caenorhabditis elegans C37C3.2a (C37C3.2) mRNA, complete cds. A 
C37C3.2b.1 ENSEMBL cdna:known chromosome:CEL140:V:7857585:7860569:1 gene:C37C3.2 A 
C37C3.2b.3 ENSEMBL cdna:known chromosome:CEL140:V:7857583:7860569:1 gene:C37C3.2 A 
C37C3.2b.4 ENSEMBL cdna:known chromosome:CEL140:V:7857585:7860569:1 gene:C37C3.2 A 
C37C3.2b.2 ENSEMBL cdna:known chromosome:CEL140:V:7857585:7860569:1 gene:C37C3.2 A 
NM_072623 NCBI Caenorhabditis elegans C37C3.2c (C37C3.2) mRNA, complete cds. A 
C37C3.2a ENSEMBL cdna:known chromosome:CEL140:V:7858573:7860514:1 gene:C37C3.2 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7860155-7860458(+) 97.69 97.69
Public Domain and Genome References
Ensembl C37C3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL16313 Hypothetical protein C37C3.2b [Caenorhabditis elegans] ref|NP_741573.1| C37C3.2b [Caenorhabditis elegans] 0.0
blast AAC25859 Hypothetical protein C37C3.2a [Caenorhabditis elegans] ref|NP_741572.1| C37C3.2a [Caenorhabditis elegans] sp|Q22918|IF5_CAEEL Eukaryotic translation initiation factor 5 (eIF-5) 0.0
blast T34401 hypothetical protein C37C3.2 - Caenorhabditis elegans 0.0
blast AAN84849 Hypothetical protein C37C3.2c [Caenorhabditis elegans] ref|NP_505024.2| C37C3.2c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002735 EMBL-EBI Translation initiation factor IF5 3.9E-81
Pfam IPR003307 EMBL-EBI eIF4-gamma/eIF5/eIF2-epsilon 3.3E-30
Pfam IPR003307 EMBL-EBI eIF4-gamma/eIF5/eIF2-epsilon 2.2E-38
Pfam IPR003307 EMBL-EBI eIF4-gamma/eIF5/eIF2-epsilon 2.5E-35
Sequence
Target Sequence 
>C. ELEGANS:171785_X_AT
tgctgctgcatccggagcaaatgatgaagaggacttggatattgatgacatttaattgta
cagatgcnnnnnnaaaatttacctgggctaattangtttnttgngtatttnttcccatat
tcggaccaattcaactaatttcgaagaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nntagtaagcatcatttcatttctgtcttctgtattgt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTGCTGCATCCGGAGCAAATGAT 322 581 68 Antisense
CCGGAGCAAATGATGAAGAGGACTT 649 259 79 Antisense
GAGGACTTGGATATTGATGACATTT 309 405 96 Antisense
TGATGACATTTAATTGTACAGATGC 640 565 110 Antisense
TCCCATATTCGGACCAATTCAACTA 4 593 180 Antisense
GGACCAATTCAACTAATTTCGAAGA 298 521 190 Antisense
AGTAAGCATCATTTCATTTCTGTCT 553 61 251 Antisense
AGCATCATTTCATTTCTGTCTTCTG 175 79 255 Antisense
CATCATTTCATTTCTGTCTTCTGTA 413 213 257 Antisense
TCATTTCATTTCTGTCTTCTGTATT 476 619 259 Antisense
ATTTCATTTCTGTCTTCTGTATTGT 41 17 261 Antisense
Sequence Source Affymetrix Proprietary Database