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[171783_x_at]

Description C59923_rc /REP_DB=TREMBL Accession /GB=C59923 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk444h1 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 39      4grp_high_8_8 > 06      6grp_total > 39      4grp_total > 02      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 387
1 2 3 4 range
A 56.1
(-2.7)
P 		45.4
(-3)
A 		70.8
(-2.3)
P 		271.3
(3)
P 		226
B 86.6
(-2.3)
P 		61.8
(-2.7)
P 		43.6
(-3)
A 		413.1
(3)
P 		370
C 77.7
(-2.6)
P 		66
(-2.8)
P 		50.2
(-3)
P 		430.7
(3)
P 		381
avr 73.5
(-2.6) 		57.7
(-2.9) 		54.9
(-3) 		371.7
(3) 		317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 112.8
(3)
P 		70.4
(-1.7)
P 		58.3
(-3)
P 		76.1
(-1)
P 		97.2
(1.3)
P 		87.2
(0.2)
P 		55
B 125.1
(3)
P 		59.9
(-1.5)
P 		37.8
(-3)
P 		60.7
(-1.4)
P 		98.4
(1.2)
P 		109.3
(1.9)
P 		87
C 179.9
(3)
P 		63.6
(-2)
P 		41
(-3)
M 		55.5
(-2.4)
A 		93.4
(-0.7)
P 		102
(-0.4)
P 		139
avr 139.3
(3) 		64.6
(-1.8) 		45.7
(-3) 		64.1
(-1.8) 		96.3
(0.2) 		99.5
(0.4) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 20.4
(-0.9)
P 		9.9
(-3)
A 		18.5
(-1.3)
P 		39.7
(3)
P 		30
B 27.6
(-1.7)
P 		15.3
(-2.6)
P 		10.1
(-3)
A 		88
(3)
P 		78
C 25.7
(-2.1)
P 		19
(-2.8)
P 		17.5
(-3)
P 		72.6
(3)
P 		55
avr 24.6
(-1.9) 		14.7
(-3) 		15.4
(-2.9) 		66.8
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 20.8
(-0.1)
P 		25
(1.4)
P 		12.7
(-3)
P 		19.3
(-0.6)
P 		29.3
(3)
P 		21.2
(0.1)
P 		17
B 43.5
(3)
P 		19.9
(-1.1)
P 		9.2
(-3)
P 		16.1
(-1.8)
P 		40
(2.4)
P 		40.8
(2.5)
P 		34
C 66.7
(3)
P 		19.4
(-2)
P 		10.4
(-3)
M 		11.2
(-2.9)
A 		30.2
(-0.9)
P 		34.1
(-0.5)
P 		56
avr 43.7
(3) 		21.4
(-1.1) 		10.8
(-3) 		15.5
(-2.1) 		33.2
(1.1) 		32
(0.9) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171783_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27908
Sequence Type Exemplar sequence
Representative Public ID C59923 NCBI
Target Description C59923_rc /REP_DB=TREMBL Accession /GB=C59923 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk444h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C35B1.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:4103011:4106256:1 gene:C35B1.1 11/11 None
C35B1.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:4103013:4106256:1 gene:C35B1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4105989-4106170(+) 73.14 73.14
Public Domain and Genome References
Ensembl C35B1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC02561 Ubiquitin conjugating enzyme protein 1 [Caenorhabditis elegans] ref|NP_500480.1| UBiquitin Conjugating enzyme family member (ubc-1) [Caenorhabditis elegans] sp|P52478|UBC1_CAEEL Ubiquitin-conjugating enzyme E2 1 (Ubiquitin-protein ligase 1) (Ubiquitin carrier protein 1) gb|AAA83388.1| similar to yeast RAD6 DNA repair protein, Swiss-Prot Accession Number P06104 1.0E-108
blast T32959 hypothetical protein C35B1.1 - Caenorhabditis elegans 1.0E-105
blast CAE56741 Hypothetical protein CBG24535 [Caenorhabditis briggsae] 2.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR000608 EMBL-EBI Ubiquitin-conjugating enzymes 2.8E-78
Sequence
Target Sequence 
>C. ELEGANS:171783_X_AT
ggattttattgattgatttccaaccataattgtcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTTTATTGATTGATTTCCAACC 514 509 176 Antisense
GATTTTATTGATTGATTTCCAACCA 265 429 177 Antisense
ATTTTATTGATTGATTTCCAACCAT 361 15 178 Antisense
TTTTATTGATTGATTTCCAACCATA 369 675 179 Antisense
TTTATTGATTGATTTCCAACCATAA 460 673 180 Antisense
TATTGATTGATTTCCAACCATAATT 347 663 182 Antisense
ATTGATTGATTTCCAACCATAATTG 384 5 183 Antisense
TGATTGATTTCCAACCATAATTGTC 636 561 185 Antisense
GATTGATTTCCAACCATAATTGTCT 288 429 186 Antisense
ATTGATTTCCAACCATAATTGTCTT 352 5 187 Antisense
TTGATTTCCAACCATAATTGTCTTT 499 701 188 Antisense
Sequence Source Affymetrix Proprietary Database