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[171781_x_at] GTP-binding protein like

Description C38342_rc /REP_DB=TREMBL Accession /GB=C38342 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk491f5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 02      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 77      6grp_total > 34      4grp_total > 01      6grp_highest_sub > 01_02_03      6grp_cgc > 34      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1804
1 2 3 4 range
A 1664.2
(-2.7)
P 		1783.1
(-2.2)
P 		1601.9
(-3)
P 		3021.5
(3)
P 		1420
B 2000.4
(-1.3)
P 		1500.1
(-3)
P 		2166.8
(-0.8)
P 		3304.4
(3)
P 		1804
C 1590.5
(-3)
P 		1597.9
(-3)
P 		1864.6
(-1.7)
P 		2891.9
(3)
P 		1301
avr 1751.7
(-2.5) 		1627
(-3) 		1877.8
(-2) 		3072.6
(3) 		1446

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 759
1 2 3 4 5 6 range
A 1203.3
(0)
P 		1376.4
(1.8)
P 		1495.4
(3)
P 		1226.9
(0.2)
P 		910.3
(-3)
P 		1280.4
(0.8)
P 		585
B 1354.5
(1.2)
P 		1447.7
(2.2)
P 		1519.9
(3)
P 		1304.1
(0.6)
P 		1075.5
(-1.9)
P 		975.3
(-3)
P 		545
C 1611.3
(3)
P 		1378
(1.2)
P 		1284.4
(0.4)
P 		852.8
(-3)
P 		1319
(0.7)
P 		1368.5
(1.1)
P 		759
avr 1389.7
(2.2) 		1400.7
(2.4) 		1433.2
(3) 		1127.9
(-2.5) 		1101.6
(-3) 		1208.1
(-1.1) 		332
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 334
1 2 3 4 range
A 605.9
(3)
P 		387.1
(-3)
P 		418.8
(-2.1)
P 		442.3
(-1.5)
P 		219
B 637.9
(1.8)
P 		370.5
(-3)
P 		502.1
(-0.6)
P 		704.2
(3)
P 		334
C 526.5
(-0.9)
P 		459.4
(-3)
P 		649.9
(3)
P 		487.6
(-2.1)
P 		191
avr 590.1
(3) 		405.7
(-3) 		523.6
(0.8) 		544.7
(1.5) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 426
1 2 3 4 5 6 range
A 221.8
(-3)
P 		489.5
(3)
P 		325.7
(-0.7)
P 		311.2
(-1)
P 		274.7
(-1.8)
P 		311.7
(-1)
P 		268
B 471.3
(2.5)
P 		481.9
(3)
P 		369.1
(-2)
P 		345.4
(-3)
P 		437
(1)
P 		363.7
(-2.2)
P 		137
C 597.2
(3)
P 		420.5
(0.5)
P 		326.9
(-0.8)
P 		171.5
(-3)
P 		426.8
(0.6)
P 		458.1
(1)
P 		426
avr 430.1
(1.9) 		464
(3) 		340.6
(-0.9) 		276
(-3) 		379.5
(0.3) 		377.8
(0.2) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171781_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27629
Sequence Type Exemplar sequence
Representative Public ID C38342 NCBI
Target Description C38342_rc /REP_DB=TREMBL Accession /GB=C38342 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk491f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060948
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000036234 ENSEMBL cdna:SNAP chromosome:CEL140:I:13348468:13351857:1 None
GENEFINDER00000036235 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13348468:13351857:1 None
W08E3.3.2 ENSEMBL cdna:known chromosome:CEL140:I:13348452:13352039:1 gene:W08E3.3 A 
W08E3.3.1 ENSEMBL cdna:known chromosome:CEL140:I:13348453:13352054:1 gene:W08E3.3 A 
NM_060948 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-210) (tag-210) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13350733-13351921(+) 98.67 98.67
Public Domain and Genome References
Gene Title GTP-binding protein like
Gene Symbol tag-210
Ensembl W08E3.3
Entrez Gene 173205 Entrez gene
SwissProt P91917 EMBL-EBI
WormBase CE14708 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:263224_AT expressed protein at
CANINE_2:CFA.19273.1.S1_AT similar to Putative GTP-binding protein PTD004 cfa
CANINE_2:CFA.20186.1.S1_AT similar to Putative GTP-binding protein PTD004 cfa
CANINE_2:CFA.20186.2.A1_AT similar to Putative GTP-binding protein PTD004 cfa
CANINE_2:CFAAFFX.20407.1.S1_AT similar to Putative GTP-binding protein PTD004 cfa
CANINE_2:CFAAFFX.20407.1.S1_S_AT similar to Putative GTP-binding protein PTD004 cfa
DROSOPHILA_2:1623809_S_AT dm
DROSGENOME1:144766_AT dm
HG-U133_PLUS_2:224525_S_AT GTP-binding protein PTD004 hs
HG-U133B:224525_S_AT GTP-binding protein PTD004 hs
HG-U133_PLUS_2:219293_S_AT GTP-binding protein PTD004 hs
HG-U133A:219293_S_AT GTP-binding protein PTD004 hs
HG-U133A_2:219293_S_AT GTP-binding protein PTD004 hs
HU35KSUBA:T35725_S_AT GTP-binding protein PTD004 hs
HU35KSUBA:R68884_AT GTP-binding protein PTD004 hs
HU35KSUBB:RC_T16358_S_AT GTP-binding protein PTD004 hs
HU35KSUBD:RC_T17374_AT GTP-binding protein PTD004 hs
U133_X3P:G9558756_3P_S_AT GTP-binding protein PTD004 hs
U133_X3P:G7018425_3P_S_AT GTP-binding protein PTD004 hs
HG-U95B:42330_AT GTP-binding protein PTD004 hs
HG-U95C:65966_AT GTP-binding protein PTD004 hs
HG-U95B:43654_AT GTP-binding protein PTD004 hs
HU35KSUBB:RC_AA133482_AT GTP-binding protein PTD004 hs
MOUSE430_2:1432151_AT RIKEN cDNA 2810409H07 gene mm
MOUSE430A_2:1432151_AT RIKEN cDNA 2810409H07 gene mm
MOE430A:1432151_AT RIKEN cDNA 2810409H07 gene mm
MOUSE430A_2:1430053_A_AT RIKEN cDNA 2810409H07 gene mm
MOE430A:1430053_A_AT RIKEN cDNA 2810409H07 gene mm
MOUSE430_2:1430053_A_AT RIKEN cDNA 2810409H07 gene mm
MU11KSUBB:MSA.10958.0_F_AT RIKEN cDNA 2810409H07 gene mm
MG-U74BV2:116189_AT RIKEN cDNA 2810409H07 gene mm
MG-U74AV2:160166_R_AT RIKEN cDNA 2810409H07 gene mm
MOE430A:1460391_AT RIKEN cDNA 2810409H07 gene mm
MOUSE430A_2:1460391_AT RIKEN cDNA 2810409H07 gene mm
MOUSE430_2:1460391_AT RIKEN cDNA 2810409H07 gene mm
MOE430A:1438094_X_AT RIKEN cDNA 2810409H07 gene mm
MOUSE430A_2:1438094_X_AT RIKEN cDNA 2810409H07 gene mm
MOUSE430_2:1438094_X_AT RIKEN cDNA 2810409H07 gene mm
MU19KSUBC:TC37461_AT RIKEN cDNA 2810409H07 gene, mRNA (cDNA clone MGC:36199 IMAGE:4009561) mm
RG-U34A:U21721MRNA_AT similar to RIKEN cDNA 2810409H07 (predicted) rn
RAE230B:1397077_AT Similar to RIKEN cDNA 2810409H07 (predicted) rn
RAT230_2:1397077_AT Similar to RIKEN cDNA 2810409H07 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07131 Hypothetical protein W08E3.3 [Caenorhabditis elegans] ref|NP_493349.1| Temporarily Assigned Gene name family member (tag-210) [Caenorhabditis elegans] sp|P91917|YCHF_CAEEL Putative GTP-binding protein W08E3.3 0.0
blast CAE73013 Hypothetical protein CBG20369 [Caenorhabditis briggsae] 0.0
blast EAA06828 ENSANGP00000019083 [Anopheles gambiae str. PEST] ref|XP_311198.2| ENSANGP00000019083 [Anopheles gambiae str. PEST] 1.0E-156
Protein Domains
Database ID Description E-Value
Pfam IPR004396 EMBL-EBI Conserved hypothetical protein 92 1.0E-126
Pfam IPR004396 EMBL-EBI Conserved hypothetical protein 92 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:171781_X_AT
gctgaagtcatgaaagttgccgatttgatcgagttgggagatgaggataagtgcaaagcc
ggcggcaaataccgtcaacaaggaaagacgtacattgttcaagacggtgacgtcatttta
ttcaaattcaatgccggagccggtcttcaagnnnnnnnnnnnnnnnnnnnnnnnnnntcc
caaattgttcattgcccggggttcccaaatttcctgtttagtagtcattttccg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGAAGTCATGAAAGTTGCCGATT 122 297 15 Antisense
GTTGCCGATTTGATCGAGTTGGGAG 77 441 30 Antisense
TGAGGATAAGTGCAAAGCCGGCGGC 562 565 56 Antisense
AGCCGGCGGCAAATACCGTCAACAA 641 83 71 Antisense
GACGTACATTGTTCAAGACGGTGAC 185 377 101 Antisense
GACGGTGACGTCATTTTATTCAAAT 380 377 117 Antisense
ATTCAAATTCAATGCCGGAGCCGGT 218 7 134 Antisense
TTCAATGCCGGAGCCGGTCTTCAAG 331 685 141 Antisense
TCCCAAATTGTTCATTGCCCGGGGT 659 595 192 Antisense
TCCCAAATTTCCTGTTTAGTAGTCA 512 291 217 Antisense
TTTCCTGTTTAGTAGTCATTTTCCG 664 669 224 Antisense
Sequence Source Affymetrix Proprietary Database