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[171780_x_at]

Description C59507_rc /REP_DB=TREMBL Accession /GB=C59507 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk437c7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 40      6grp_total > 05      4grp_total > 60      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 906
1 2 3 4 range
A 938.5
(1.4)
P 		793.7
(0.4)
P 		1159.6
(3)
P 		308.1
(-3)
P 		852
B 842.5
(1.6)
P 		979.9
(2.7)
P 		1013.4
(3)
P 		279.3
(-3)
P 		734
C 860.8
(0.8)
P 		1087.1
(2.3)
P 		1185.2
(3)
P 		284.5
(-3)
P 		901
avr 880.6
(1.3) 		953.6
(1.8) 		1119.4
(3) 		290.6
(-3) 		829

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 631
1 2 3 4 5 6 range
A 825.4
(3)
P 		762.2
(2.1)
P 		649.4
(0.5)
P 		513.1
(-1.4)
P 		805.8
(2.7)
P 		397.1
(-3)
P 		428
B 836.8
(3)
P 		633.9
(0.4)
P 		432.4
(-2.1)
P 		629.7
(0.4)
P 		619.3
(0.3)
P 		360.9
(-3)
P 		476
C 991.7
(3)
P 		647.5
(-0.4)
P 		581.8
(-1.1)
P 		388.7
(-3)
P 		633.6
(-0.6)
P 		408.9
(-2.8)
P 		603
avr 884.6
(3) 		681.2
(0.5) 		554.5
(-1) 		510.5
(-1.5) 		686.2
(0.6) 		389
(-3) 		496
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 368
1 2 3 4 range
A 341.7
(3)
P 		172.3
(-0.4)
P 		303.2
(2.2)
P 		45.1
(-3)
P 		297
B 268.7
(3)
P 		242
(2.2)
P 		234.8
(2)
P 		59.5
(-3)
P 		209
C 285
(0.9)
P 		312.6
(1.3)
P 		413.1
(3)
P 		48
(-3)
P 		365
avr 298.5
(2.6) 		242.3
(1.3) 		317
(3) 		50.9
(-3) 		266

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 152.2
(-1.1)
P 		271.1
(3)
P 		141.4
(-1.5)
P 		130.1
(-1.9)
P 		243.2
(2)
P 		96.7
(-3)
P 		174
B 291.2
(3)
P 		211
(0.4)
P 		105
(-3)
P 		166.8
(-1)
P 		251.6
(1.7)
P 		134.6
(-2)
P 		186
C 367.6
(3)
P 		197.6
(-0.5)
P 		148.1
(-1.6)
P 		78.2
(-3)
P 		205
(-0.4)
P 		136.9
(-1.8)
P 		289
avr 270.3
(3) 		226.6
(1.2) 		131.5
(-2.6) 		125
(-2.9) 		233.3
(1.5) 		122.7
(-3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171780_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27962
Sequence Type Exemplar sequence
Representative Public ID C59507 NCBI
Target Description C59507_rc /REP_DB=TREMBL Accession /GB=C59507 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk437c7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067292
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067292 NCBI Caenorhabditis elegans Y39E4A.3 (Transketolase) mRNA, complete cds. A 
SNAP00000009409 ENSEMBL cdna:SNAP chromosome:CEL140:III:12967738:12971336:-1 None
GENEFINDER00000009418 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12967738:12969446:-1 None
Y39E4A.3.1 ENSEMBL cdna:known chromosome:CEL140:III:12967461:12971336:-1 gene:Y39E4A.3 A 
Y39E4A.3.2 ENSEMBL cdna:known chromosome:CEL140:III:12967461:12971338:-1 gene:Y39E4A.3 A 
Y39E4A.3.3 ENSEMBL cdna:known chromosome:CEL140:III:12967461:12972014:-1 gene:Y39E4A.3 A 
Y39E4A.3.4 ENSEMBL cdna:known chromosome:CEL140:III:12967461:12971623:-1 gene:Y39E4A.3 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12967519-12967819(-) 94.86 94.86
Public Domain and Genome References
Ensembl Y39E4A.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16329 Hypothetical protein Y39E4A.3a [Caenorhabditis elegans] ref|NP_499693.2| Y39E4A.3 [Caenorhabditis elegans] 0.0
blast CAJ21557 Hypothetical protein Y39E4A.3b [Caenorhabditis elegans] 0.0
blast CAE69558 Hypothetical protein CBG15770 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001017 EMBL-EBI Dehydrogenase, E1 component 1.0E-126
Pfam IPR001017 EMBL-EBI Dehydrogenase, E1 component 6.5E-95
Sequence
Target Sequence 
>C. ELEGANS:171780_X_AT
tgccattccgatgtgttttatcaaatagattttgcttttatttatgaaccctcatgtttt
gtttctaggtgccttttcccgtgttccccgcatatttgttttgtcagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCATTCCGATGTGTTTTATCAAA 585 585 184 Antisense
ATTCCGATGTGTTTTATCAAATAGA 128 9 188 Antisense
GATTTTGCTTTTATTTATGAACCCT 460 429 211 Antisense
TTTGCTTTTATTTATGAACCCTCAT 408 667 214 Antisense
TATGAACCCTCATGTTTTGTTTCTA 349 655 226 Antisense
GAACCCTCATGTTTTGTTTCTAGGT 691 345 229 Antisense
CTCATGTTTTGTTTCTAGGTGCCTT 73 227 234 Antisense
CATGTTTTGTTTCTAGGTGCCTTTT 26 65 236 Antisense
TGTTCCCCGCATATTTGTTTTGTCA 136 563 265 Antisense
TTCCCCGCATATTTGTTTTGTCAGC 541 697 267 Antisense
TCCCCGCATATTTGTTTTGTCAGCC 23 597 268 Antisense
Sequence Source Affymetrix Proprietary Database