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[171779_x_at]

Description C37614_rc /REP_DB=TREMBL Accession /GB=C37614 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk476a4 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 06      4grp_high_8_8 > 42      6grp_total > 06      4grp_total > 45      6grp_total_sub > Decrease      6grp_high1_sub > De      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 308.3
(3)
P 		285.7
(1.6)
P 		213.3
(-3)
P 		234.3
(-1.7)
A 		95
B 344
(3)
P 		290.1
(1.2)
P 		199.1
(-1.9)
P 		167.4
(-3)
P 		177
C 369
(3)
P 		316.4
(1.2)
P 		191.9
(-3)
P 		199.5
(-2.7)
A 		177
avr 340.4
(3) 		297.4
(1.2) 		201.4
(-3) 		200.4
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 373.6
(3)
P 		242.7
(0.4)
P 		184.6
(-0.8)
P 		79.3
(-2.9)
A 		134.3
(-1.8)
P 		75.1
(-3)
A 		299
B 387.7
(3)
P 		198.2
(-1.1)
P 		224.6
(-0.6)
P 		132.6
(-2.6)
P 		117
(-2.9)
P 		113.7
(-3)
P 		274
C 290.2
(3)
P 		218.7
(0.8)
P 		158.5
(-1.1)
P 		96.3
(-3)
A 		130.1
(-2)
A 		129.2
(-2)
P 		194
avr 350.5
(3) 		219.9
(-0.2) 		189.2
(-0.9) 		102.7
(-3) 		127.1
(-2.4) 		106
(-2.9) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 112.3
(3)
P 		62
(-0.9)
P 		55.8
(-1.3)
P 		34.3
(-3)
A 		78
B 109.7
(3)
P 		71.7
(-0.1)
P 		46.1
(-2.2)
P 		35.7
(-3)
P 		74
C 122.2
(3)
P 		91
(0.9)
P 		66.9
(-0.7)
P 		33.6
(-3)
A 		89
avr 114.7
(3) 		74.9
(0) 		56.3
(-1.4) 		34.5
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 68.9
(1.5)
P 		86.3
(3)
P 		40.2
(-1.1)
P 		20.1
(-2.8)
A 		40.5
(-1)
P 		18.3
(-3)
A 		68
B 134.9
(3)
P 		66
(-1.1)
P 		54.5
(-1.8)
P 		35.1
(-3)
P 		47.5
(-2.3)
P 		42.4
(-2.6)
P 		100
C 107.6
(3)
P 		66.7
(0.2)
P 		40.3
(-1.6)
P 		19.4
(-3)
A 		42.1
(-1.5)
A 		43.2
(-1.4)
P 		88
avr 103.8
(3) 		73
(0.7) 		45
(-1.5) 		24.9
(-3) 		43.4
(-1.6) 		34.6
(-2.3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171779_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27619
Sequence Type Exemplar sequence
Representative Public ID C37614 NCBI
Target Description C37614_rc /REP_DB=TREMBL Accession /GB=C37614 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk476a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058532(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058532 NCBI Caenorhabditis elegans Y37E3.13 (Y37E3.13) mRNA, complete cds. 10/11 None
SNAP00000001194 ENSEMBL cdna:SNAP chromosome:CEL140:I:2085675:2088199:-1 10/11 None
GENEFINDER00000001213 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2085675:2094525:-1 10/11 None
Y37E3.13 ENSEMBL cdna:known chromosome:CEL140:I:2085675:2093824:-1 gene:Y37E3.13 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2085678-2087121(-) 99.38 99.38
Public Domain and Genome References
Gene Title
Ensembl Y37E3.13
Entrez Gene 171771 Entrez gene
SwissProt Q9BKU0 EMBL-EBI
WormBase CE36338 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490933 Y37E3.13 [Caenorhabditis elegans] gb|AAK27874.2| Hypothetical protein Y37E3.13 [Caenorhabditis elegans] 0.0
blast NP_490933 Y37E3.13 [Caenorhabditis elegans] gb|AAK27874.2| Hypothetical protein Y37E3.13 [Caenorhabditis elegans] 1.0E-110
blast CAE74326 Hypothetical protein CBG22037 [Caenorhabditis briggsae] 4.0E-41
blast CAE74326 Hypothetical protein CBG22037 [Caenorhabditis briggsae] 5.0E-41
blast NP_963924 leucine rich repeat neuronal 5 precursor [Homo sapiens] ref|NP_006329.2| leucine rich repeat neuronal 5 precursor [Homo sapiens] emb|CAI14096.1| leucine rich repeat neuronal 5 [Homo sapiens] sp|O75325|LRRN5_HUMAN Leucine-rich repeats neuronal protein 5 precursor (Glioma amplified on chromosome 1 protein) 2.0E-10
blast AAH56798 Hypothetical protein MGC63670 [Danio rerio] ref|NP_956909.1| hypothetical protein LOC393587 [Danio rerio] 4.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.35
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.14
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.021
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.56
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.3E-5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.3E-5
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.35
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.14
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.021
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.56
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.3E-5
Sequence
Target Sequence 
>C. ELEGANS:171779_X_AT
atatttgcacacaaaggtgctcgaaatcccacacgattcgtgcnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnngcagatgcagatgcagcaggagcaaatgcagaaatgcccaat
gctcccnnnnntccgtcacgaaagcctctgccgcctttctaacgaatcgggatcttcaaa
tcggtcgataccttcgtgctt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTTGCACACAAAGGTGCTCGAA 448 19 24 Antisense
CAAAGGTGCTCGAAATCCCACACGA 318 193 35 Antisense
GCTCGAAATCCCACACGATTCGTGC 415 297 42 Antisense
AGATGCAGATGCAGCAGGAGCAAAT 681 57 164 Antisense
GATGCAGCAGGAGCAAATGCAGAAA 390 413 171 Antisense
AAATGCAGAAATGCCCAATGCTCCC 542 119 185 Antisense
TCTGCCGCCTTTCTAACGAATCGGG 262 607 230 Antisense
GCCGCCTTTCTAACGAATCGGGATC 431 283 233 Antisense
CGAATCGGGATCTTCAAATCGGTCG 568 253 246 Antisense
CGGGATCTTCAAATCGGTCGATACC 192 243 251 Antisense
CAAATCGGTCGATACCTTCGTGCTT 507 191 260 Antisense
Sequence Source Affymetrix Proprietary Database