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[171778_x_at]

Description CEK056BYF /REP_DB=TREMBL Accession /GB=D68841 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk56b11 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      4grp_highest_8_8 > 10      4grp_high_8_8 > 62      6grp_highest_nonorm > 43      6grp_total > 51      4grp_total > 57      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1176
1 2 3 4 range
A 509
(-1.5)
P 		922.1
(1.2)
P 		1199
(3)
P 		277.7
(-3)
P 		921
B 470.9
(-1.6)
P 		839.2
(0.3)
P 		1367.9
(3)
P 		192
(-3)
P 		1176
C 433.3
(-2.2)
P 		950.2
(2.4)
P 		1014.2
(3)
P 		340.4
(-3)
P 		674
avr 471.1
(-1.7) 		903.8
(1.1) 		1193.7
(3) 		270
(-3) 		924

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1159
1 2 3 4 5 6 range
A 826.8
(-1.6)
P 		969.8
(-0.7)
P 		1577.4
(3)
P 		1394.8
(1.9)
P 		890.3
(-1.2)
P 		599.6
(-3)
P 		978
B 1065.9
(0.4)
P 		827.9
(-1.2)
P 		1461.5
(3)
P 		1364.4
(2.4)
P 		879.5
(-0.9)
P 		559.7
(-3)
P 		902
C 1010.7
(-0.1)
P 		786.5
(-1.2)
P 		1602.1
(3)
P 		1276.2
(1.3)
P 		1034.6
(0.1)
P 		443.3
(-3)
P 		1159
avr 967.8
(-0.4) 		861.4
(-1.1) 		1547
(3) 		1345.1
(1.8) 		934.8
(-0.6) 		534.2
(-3) 		1013
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 185.3
(0.2)
P 		200.2
(0.5)
P 		313.4
(3)
P 		40.7
(-3)
P 		273
B 150.2
(-0.6)
P 		207.3
(0.6)
P 		317
(3)
P 		40.9
(-3)
P 		276
C 143.4
(-1.3)
P 		273.2
(1.4)
P 		353.5
(3)
P 		57.4
(-3)
P 		296
avr 159.6
(-0.6) 		226.9
(0.8) 		328
(3) 		46.3
(-3) 		282

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 152.4
(-2.8)
P 		344.9
(2.7)
P 		343.5
(2.7)
P 		353.7
(3)
P 		268.6
(0.5)
P 		146
(-3)
P 		208
B 370.9
(3)
P 		275.6
(-0.5)
P 		354.9
(2.4)
P 		361.4
(2.6)
P 		357.3
(2.5)
P 		208.7
(-3)
P 		162
C 374.6
(2.2)
P 		240
(-0.9)
P 		407.8
(3)
P 		256.7
(-0.5)
P 		334.8
(1.3)
P 		148.4
(-3)
P 		259
avr 299.3
(0.9) 		286.8
(0.6) 		368.7
(3) 		323.9
(1.7) 		320.2
(1.6) 		167.7
(-3) 		201
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171778_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27856
Sequence Type Exemplar sequence
Representative Public ID CEK056BYF NCBI
Target Description CEK056BYF /REP_DB=TREMBL Accession /GB=D68841 /FEA=Transcript Cluster /DEF=C.elegans cDNA clone yk56b11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064524(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064524 NCBI Caenorhabditis elegans Y39G8B.1a (Y39G8B.1) mRNA, complete cds. 9/11 A 
GENEFINDER00000038672 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13970803:13972835:-1 9/11 None
Y39G8B.1a ENSEMBL cdna:known chromosome:CEL140:II:13970683:13972838:-1 gene:Y39G8B.1 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064523 1/11 Cross Hyb Matching Probes A 
SNAP00000038665 1/11 Cross Hyb Matching Probes None
Y39G8B.1b 1/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175047 2 1 NM_064524 171778_x_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13970735-13971286(-) 75.0 75.0
Public Domain and Genome References
Ensembl Y39G8B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54385 Hypothetical protein Y39G8B.1a [Caenorhabditis elegans] ref|NP_496925.1| Y39G8B.1a [Caenorhabditis elegans] 1.0E-179
blast CAB60335 Hypothetical protein Y39G8B.1b [Caenorhabditis elegans] ref|NP_496924.1| Y39G8B.1b [Caenorhabditis elegans] 1.0E-167
blast CAE73313 Hypothetical protein CBG20740 [Caenorhabditis briggsae] 1.0E-165
Protein Domains
Database ID Description E-Value
Pfam IPR001395 EMBL-EBI Aldo/keto reductase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:171778_X_AT
tcccgcccaaatcatcattcgttggttcgtcgacagtgggctctcggccatcccaaaatc
agtgacaccacaacgaatctccgaaaaccttgcagttttcgacttccagctgaccgcaga
ggaaatctcgaaaatcgacgggatcaatnnnnnctggagaatcgtagatttgagccaacg
cgacggagatcacccacactgtccattcctcgaggagttt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCGCCCAAATCATCATTCGTTGG 257 597 38 Antisense
ATTCGTTGGTTCGTCGACAGTGGGC 468 9 54 Antisense
TCGGCCATCCCAAAATCAGTGACAC 20 607 81 Antisense
TCAGTGACACCACAACGAATCTCCG 35 623 96 Antisense
ACGAATCTCCGAAAACCTTGCAGTT 239 91 110 Antisense
GACTTCCAGCTGACCGCAGAGGAAA 653 371 138 Antisense
AGCTGACCGCAGAGGAAATCTCGAA 141 71 145 Antisense
GAAATCTCGAAAATCGACGGGATCA 345 363 159 Antisense
GAATCGTAGATTTGAGCCAACGCGA 335 327 196 Antisense
TTTGAGCCAACGCGACGGAGATCAC 661 665 206 Antisense
ACACTGTCCATTCCTCGAGGAGTTT 463 109 233 Antisense
Sequence Source Affymetrix Proprietary Database